BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907967

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51310.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-depen...   106    3e-22
  AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:178358...  84.2    1e-15


> AT5G51310.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-dependent 
oxygenase superfamily protein | chr5:20852854-20854718 
REVERSE LENGTH=978
Length=978

 Score =  106 bits (57),  Expect = 3e-22
 Identities = 59/60 (98%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  46   AAAGAGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT  105
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  913  AAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT  972


> AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:17835849-17839254 
REVERSE LENGTH=1984
Length=1984

 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  473  AAGATTCTAAAGAAAGAAGTCCATCTTCTATATCAAGAGACCAATCAGAGT  523
            ||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  454  AAGATTCTAAAGAAAGAAGTCCATCTTCTATATCTGGAGACCAATCAGAGT  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5