BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907972
Length=327
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01590.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 468 2e-131
AT4G35680.1 | Symbols: | Arabidopsis protein of unknown functi... 387 5e-107
> AT4G01590.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Arabidopsis protein of unknown function
(DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345
proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa
- 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes
- 773 (source: NCBI BLink). | chr4:688881-690415 REVERSE
LENGTH=1022
Length=1022
Score = 468 bits (253), Expect = 2e-131
Identities = 307/332 (92%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 1 ATGGATCTTTCTTTGATTTTCTTCTTCTTAGACCCTGATAACTTCCCTAAACAACTTCTT 60
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 498 ATGGATCTTTCTTTGATTTTCTTGTTCTTAGA-CCTGATAACTTCCCTAAAGAACTTCTT 556
Query 61 GGAGAAACTCGAAGAG---AACGGCATGTTAAGAGAGCTAAATGGAGTCAAGAAGCTGAT 117
||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 557 GGAGATACTCGAAGAGAACAACGGCCTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGAT 616
Query 118 TTGCAGAAATTGGATGTGTTTGAGAAGCTTGAAGCTAAGTCTAATGCtgaaggtaaggaa 177
|||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||
Sbjct 617 TTGCAGAAATTGGATGTGTTTGAGAAGCTTGAAGCTAAGTTTAAGGTTGAAGGCAAGGAA 676
Query 178 gagaaagaagaaggagaagatgatgaagaagttgaggaatcagaaggagaagaaTCTGAT 237
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 677 GAGAAAGAAGAAGGGGAAGATGATGAAGAAGTTGTGGAATCAGAAGGAGAAGAATCTGAT 736
Query 238 AACAGAGATTATGATCAGAATCAAGACTTTGATGATGATAATGACGATTATAATCAA-GC 296
||| ||||||||||||||||||||||||||||||||||| | |||||||||||| || |
Sbjct 737 AACGGAGATTATGATCAGAATCAAGACTTTGATGATGATGACGACGATTATAAT-AACGA 795
Query 297 GGATGATGG-TGATTTTGAAGAGGTGTATTAA 327
||||||||| | | || |||||||||||||||
Sbjct 796 GGATGATGGATTAGTT-GAAGAGGTGTATTAA 826
> AT4G35680.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16917749-16920008 FORWARD LENGTH=1960
Length=1960
Score = 387 bits (209), Expect = 5e-107
Identities = 275/305 (90%), Gaps = 12/305 (4%)
Strand=Plus/Plus
Query 30 AGACCCTGATAACTTCCCTAAACAACTTCTTGGAGAAACTCGAAGAG---AACGGCATGT 86
||| |||||||||||| ||||| ||||| ||||||| |||||||||| |||||| |||
Sbjct 1402 AGA-CCTGATAACTTCTCTAAAGAACTTGTTGGAGATACTCGAAGAGAACAACGGCCTGT 1460
Query 87 TAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCT 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCT 1520
Query 147 TGAAG-CTAAGTCTAATG-Ctgaaggtaaggaagagaaagaagaaggagaagatgatgaa 204
||| | |||||| ||| | || |||| || |||||||||||||| |||||||||||||||
Sbjct 1521 TGA-GTCTAAGTTTAA-GACTCAAGGCAATGAAGAGAAAGAAGACGGAGAAGATGATGAA 1578
Query 205 gaagttgaggaatcagaaggagaagaaTCTGATAACAGAGATTATGATCAGAATCAAGAC 264
|||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1579 CAAGTTGTGGAATCAGAAGGAGAAGAATCAGATAACGGAGATTATGATCAGAATCAAGAC 1638
Query 265 TTTGATGATGAT-AATGACGATTATAATCAAGCGGATGATGGTG-ATTTTGAAGAGGTGT 322
|||||||||||| || |||||||||||||| | ||| ||||||| |||| ||||||||||
Sbjct 1639 TTTGATGATGATGAA-GACGATTATAATCATGAGGAGGATGGTGGATTT-GAAGAGGTGT 1696
Query 323 ATTAA 327
|||||
Sbjct 1697 ATTAA 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15231127947
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5