BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907989
Length=303
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 368 2e-101
AT5G14995.1 | Symbols: | ECA1 gametogenesis related family pro... 324 3e-88
> AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein | chr5:4854875-4855171 FORWARD LENGTH=297
Length=297
Score = 368 bits (199), Expect = 2e-101
Identities = 265/296 (90%), Gaps = 8/296 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATTGTAACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
Query 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATACCAAATCCTGGTGATTGCTTCTCG 120
||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCG 120
Query 121 TCAATAAAGAAGGTCAAAGGTTGTGTCG-ATGCTGTGAAAGCTGCCACTAAAGGAGAT-T 178
||||| |||||||| |||||||||| || |||||||||||||||||||||||||| || |
Sbjct 121 TCAATCAAGAAGGTTAAAGGTTGTG-CGGATGCTGTGAAAGCTGCCACTAAAGGACATCT 179
Query 179 TCAAAGGTTTGGACAAGGATTGTTGCCACGCCATCAATGGCCTCGTCC-ACCACTGTTTT 237
|| | | ||||| ||||||||||||||||| |||||||| ||| | || || | ||||||
Sbjct 180 TCTACG-TTTGGTCAAGGATTGTTGCCACGTCATCAATGACCTTG-CCGACGATTGTTTT 237
Query 238 CTGATCCTTTTCCCAGGAAAACCATACATTGCA-CTACGCGTTAAGGATGCATGTT 292
| |||| ||||||| |||||||| |||||||| | || ||||||| |||||||||
Sbjct 238 CCGATCATTTTCCCCGGAAAACCTTACATTGCCGC-ACTCGTTAAGCATGCATGTT 292
> AT5G14995.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:4853413-4853718 FORWARD LENGTH=306
Length=306
Score = 324 bits (175), Expect = 3e-88
Identities = 268/311 (86%), Gaps = 13/311 (4%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATTGT-AACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTT 59
||||||| ||||||||| || || |||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGGGAATAAAACAGATCGTCAA-AGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTT 59
Query 60 GCTTTGTCATCATCAATCCGAAGCTCAAGC-GC-C-GATACCAAATCCTGGTGATTGCTT 116
||| ||||||||||||||||||| |||||| || | || ||||| ||||| || |||||
Sbjct 60 GCTCTGTCATCATCAATCCGAAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTG 119
Query 117 CTCGTCAATAAAGAAGG-TCAAAGGTTGTGTCGATGCTGTGAAAGCTGCCACTAAAGGAG 175
||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GTCGTCAATAAACAAGGTTC-AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAG 178
Query 176 ATT-TCAAAGGTTTG-GACAAGGATTGTTGCCACGCCATCAATGGCCTCGTCCACCACTG 233
||| | ||||||||| | |||||||||||||| ||||||| |||||||| || || | ||
Sbjct 179 ATTAT-AAAGGTTTGAG-CAAGGATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTG 236
Query 234 TTTTCTGATCCTTTTCC-CAGGAAAACCATACATTGCACTACGCGTTAAGGATGCATGTT 292
||||| ||| ||||| | ||||||||| |||||||| ||| ||||||||||||||||
Sbjct 237 TTTTCCGATTGTTTTCAGC-GGAAAACCAGACATTGCAGTACTCGTTAAGGATGCATGTG 295
Query 293 ATATTAATTAA 303
| ||||||||
Sbjct 296 CTGTTAATTAA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14024701971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5