BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907996
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-... 848 0.0
AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920... 156 8e-37
AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290... 115 1e-24
> AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-24409068
REVERSE LENGTH=1680
Length=1680
Score = 848 bits (459), Expect = 0.0
Identities = 722/846 (85%), Gaps = 30/846 (4%)
Strand=Plus/Plus
Query 228 GAAGAATAAGTTTCTGCCAGTGAAAGAAGTATCTAGTGATGATGC-AGCAGAAAATATGA 286
|||||||||||| | ||||| |||||||||||||||| | ||||| | |||||| || |
Sbjct 198 GAAGAATAAGTTGCCGCCAGGGAAAGAAGTATCTAGTAAGGATGCTA-AAGAAAAGATTA 256
Query 287 CTACTTCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTGTTCATCGTCTCTAGCA 346
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 257 CTACTTCTGCCATTGATTTGGCCCTCAACTCGGTGGTGAAGGTATTCACCGTCTCTAGCA 316
Query 347 AGCATAGAATTTTTCAACCTTGGCAGATTAGTATGCAGAGTGAATGCACCGGCTCTGGTT 406
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 317 AGCCTAGACTTTTTCAACCTTGGCAGATTACTATGCAGAGTGAAAGCACCGGCTCTGGTT 376
Query 407 TTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCATGTAGTAGCTGATCAAACATCTG 466
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 377 TTGTAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGTAGTGGCTAATCAAACATCCG 436
Query 467 TTAAAGTCCGAAAGCATGGTTCACCCAAAAAGTACAAAGCAAAAGTTCAAGTGGTTGGTC 526
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 437 TTAAAGTCCGAAAGCATGGTTCAACCACAAAGTACAAAGCAAAAGTTCAAGCGGTTGGTC 496
Query 527 ACGAATGTGATTTGGCCATCTTGGAGATCGATAACGA-AGAGTTTTGGGAGGGTCTTA-C 584
| |||||||||||||||||||||||||| ||||| || | ||||||||||||| | | |
Sbjct 497 ATGAATGTGATTTGGCCATCTTGGAGATTGATAATGATA-AGTTTTGGGAGGGAATGAAC 555
Query 585 CCATTTGGAGCT-GGGAGACATACCCTCCCAA--ATGGATTCTGTGGCGGTCGTTGGCTA 641
|| || ||| || ||| || |||||||| | | ||| | ||| || ||||||||
Sbjct 556 CCCTT-GGAACTCGGG-GATATACCCTCT-ATGCA-GGACACCGTGTATGTTGTTGGCTA 611
Query 642 TCCAGAAGGTGGTGATAGTATATCCGTTACGCAAGGTGTTGTGTCGAGAGTTGTACTGAG 701
|||| |||||||||||| ||||||||| || ||||||||||||||||||||| || |
Sbjct 612 TCCAAAAGGTGGTGATACCATATCCGTTTCGAAAGGTGTTGTGTCGAGAGTTGGACCCAT 671
Query 702 AAGATACAGTCACAGCTCCACCGAGTTATTGAAAATACAAATAGATGCAGCTATAAACTC 761
|| ||||||||||||| ||| || || || ||||||||||||||||||||| || |
Sbjct 672 AAAATACAGTCACAGCGGCACTGAACTACTGGCAATACAAATAGATGCAGCTATCAA-TA 730
Query 762 -TGGAAATAGTGGCGGTCCGGTAATCATGGGAAACAAAGTGGTTGGTGTAGCATTTGAAA 820
|||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 731 ATGGAAATAGTGGTGGTCCGGTAATCATGGGAAACAAAGTCGCTGGTGTAGCATTTGAAA 790
Query 821 GCCGT-TGCTGTTCTGA-ACTTATAGGCTACATAATTCCAACTCCAGTCATTAGACATTT 878
| | | || | ||| || | | ||||||||||||||||||||||| |||||||| |||||
Sbjct 791 GTC-TATGTTATTCCGATAGT-ATAGGCTACATAATTCCAACTCCGGTCATTAGGCATTT 848
Query 879 TTTAAATGGTGTTGAAGAAAGTGGTCAACATTTTAGTTTCTGCTCAATGAATTTATCATA 938
|||||||| | |||||||||||||| || || |||||||| ||||||| ||| || ||||
Sbjct 849 TTTAAATGCTATTGAAGAAAGTGGTGAAGATGTTAGTTTCGGCTCAATAAATCTAACATA 908
Query 939 TCT-AACTATGGAGCA-TGCCCACAC-CCGTAACGCCTT-AAAGATGGGCAAGGAAATGA 994
|| || ||||| || || || || |||||| | ||| ||| ||| || | ||||||
Sbjct 909 TCAGAAA-ATGGA-CAATGATCA-ACTCCGTAAGGACTTCAAA-ATGAGCGATAAAATGA 964
Query 995 CAGGGATTGCTG-TAAA-AAGTATAAACCCACTTTCGGATGCTCACAAAGTTCTGAAAAA 1052
|||| ||| || |||| || |||||||| |||||||||| ||||||||||||||||||
Sbjct 965 CAGGCATT-CTTATAAACAAA-ATAAACCCGCTTTCGGATGTTCACAAAGTTCTGAAAAA 1022
Query 1053 AGATGA 1058
||||||
Sbjct 1023 AGATGA 1028
Score = 553 bits (299), Expect = 2e-156
Identities = 502/599 (84%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 1073 AGGACCGAGTAAGTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGATACAGCGTCAT 1132
|||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1091 AGGAACGAATAACTTTCAAGCATTTGGTTTCTATGAAGAAACCATGTGAGACAGCATTAC 1150
Query 1133 TTAAAGTCTTAAGAGAAGGGAAA-GAACACGAGTTCAATA-TAAGCCTAAAACCCGTGCA 1190
|||||||||||||||| |||||| || | ||||| |||| || | |||||| |||| |
Sbjct 1151 TTAAAGTCTTAAGAGA-GGGAAAAGAGTATGAGTTTAATAGTA-GTCTAAAATCCGTACC 1208
Query 1191 ACCTCTAGTTCCAGTGAATCAATATGACATGCCTCCAAGTTATTATATATAT-GGGGGTC 1249
||| ||||||||| | ||||||||||| | || ||||||||||||||| | |||||||
Sbjct 1209 ACCACTAGTTCCAAAGCGTCAATATGACAAGTCTGCAAGTTATTATATAT-TCGGGGGTC 1267
Query 1250 TTGTTTTTGTACCTCTAACTCAACCATACATTGATCGTTCTTATATTTGCGAATGTTG-T 1308
|||||||| ||||||||||| |||||||||||||| |||||| | ||| ||||| | | |
Sbjct 1268 TTGTTTTTTTACCTCTAACTAAACCATACATTGATAGTTCTTGTGTTTCCGAATCT-GCT 1326
Query 1309 GTTAA-AAAGATGCCCACAAAAGCCGGTGAACAAATTGTAATAATTTCTCAGATTTTAGA 1367
| | ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1327 CT-AGGAAAGATGCCCAAAAAAGCCGGTGAACAAGTTGTAATAATTTCTCAGATTCTAGA 1385
Query 1368 GGATGATATCACTTCAGG-TCTCAGTATTTTTGAAGATTTACAGGTGAAGAAATTGAATG 1426
|||||| |||| | |||| | ||||||||| |||||||| |||||||||||| ||||||
Sbjct 1386 GGATGACATCAATACAGGATA-CAGTATTTTCGAAGATTTCCAGGTGAAGAAAGTGAATG 1444
Query 1427 GAGTGGAAGTGGATAATTTGAAGCATCTATGTCAGCTTATAGAGGAATGTTCCAACGAGT 1486
||||| ||||| ||||| | || ||||||| | ||||| |||||||||| | || | ||
Sbjct 1445 GAGTGCAAGTGCATAATCTCAAACATCTATATAAGCTTGTAGAGGAATGCTGCA-C-AGA 1502
Query 1487 AT-T-TGAGGTTTGACTTGGAAGACA-ATAAtttttttttCCTAGAACATAAATCTGCGA 1543
| | ||||| | |||||||| || | |||| || || ||| || |||| |||||||
Sbjct 1503 AACTGTGAGGATGGACTTGGA-GAAAGATAAGGTTATTACCCTCGATTATAAGTCTGCGA 1561
Query 1544 AAAAAGCCACTTGTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCATGTCTGAGGACC 1603
| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1562 AGAAAGTCACTTCTAAGATCTTGAAAAGTCTCAAAATACCATCGGCCGTGTCTGAGGATC 1621
Query 1604 TTCAGCCTAAACAACGGAATAACCGCCGCAAAGTTCCTCGGCAGAGCAAAAAACATTGA 1662
||||||||||||||| |||||| ||| |||||||||||| |||| ||| ||||||||
Sbjct 1622 TTCAGCCTAAACAACAGAATAAGCGCAGCAAAGTTCCTCCAAAGAGTAAAGAACATTGA 1680
> AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920-5632417
REVERSE LENGTH=1476
Length=1476
Score = 156 bits (84), Expect = 8e-37
Identities = 386/527 (73%), Gaps = 39/527 (7%)
Strand=Plus/Plus
Query 397 GGCTCTGGTTTTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCATGTAGT--A---G 451
|||||||| |||| |||| ||||||||| ||||||||||| |||||||| || | |
Sbjct 259 GGCTCTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGGAGGGG 318
Query 452 CTG-ATCA-AACAT-CT-GTTAAAGTCCGAAAG-CATGGTTCACCCAA---AAAGTACAA 503
|| || | |||| | || | || | |||| ||||| | | ||| ||| |||||
Sbjct 319 ATGAATGATCACATATTCGTGCACGT-CAAAAGACATGG--CTCTCAAGTCAAA-TACAA 374
Query 504 AGCAAAAGTTCAAGTGGTTGGTCACGAATGTGATTTGGCCATCTTGGAGATCGATAACGA 563
||||||||||||| | ||| || || |||||||||||||||||||||||||||| |||
Sbjct 375 AGCAAAAGTTCAAAAGATTGCACATGAGTGTGATTTGGCCATCTTGGAGATCGATAGCGA 434
Query 564 AGAGTTTTGGGAGGGTCTTA--CCCATTTGGAGCTGGGAGACATACC-C-TCCCAAATGG 619
||||||||| ||||| | | ||| || |||| | ||||||||||| | || ||| ||
Sbjct 435 CGAGTTTTGGAAGGGTATGAATCCC-TT-GGAGTTCGGAGACATACCGCCTCTCAA-TGA 491
Query 620 ATTCTGTGGCGGTCGTTGGCTATCCAGAAGGTGGTGATAGTATATCCGTTACGCAAGGTG 679
| | ||| || ||||| |||||| ||| |||||| | |||| |||||| ||||||
Sbjct 492 AAT-TGTATATGTTGTTGGTTATCCAAAAGCTGGTGAAACAATATGCGTTACAAAAGGTG 550
Query 680 TTGTGTC-GAGAGTTGTA-CTGAGAAGAT-ACAGTC-ACAGCTCCACCGAGTTATTGAAA 735
|||| | | ||||| | ||| ||| || || || | || ||||| | || ||| |
Sbjct 551 TTGTAACTG-GAGTTAAAACTG-GAA-ATTACCTTCGA-AGTTCCACTAAACTACTGACA 606
Query 736 ATACAAATAGATGCAGCTATAAACTCTGGAAATAGTGGCGGTCCGGTAATCATGGGAAAC 795
||||| || || ||| ||| || |||||||||||| || ||||| || | ||| ||
Sbjct 607 ATACATATTGACGCAACTACCTACGGTGGAAATAGTGGTGGCCCGGTTATTACAGGAGAC 666
Query 796 AAAGTGGTTGGTGTAGC-ATTTGAAAGCCGTTGCTGTTCTGAACT-TATAGGC-TACATA 852
||||| |||||||| | |||| ||| | ||| | | ||| || ||| | ||
Sbjct 667 AAAGTCCTTGGTGTA-CTATTTCAAATTC-TTGGAGATAAGAAAAGTACAGGTGTTG-TA 723
Query 853 ATTCCAACTCCAGTCATTAGACATTTTTTAAATGGTGTTGAAGAAAG 899
|| ||||| ||| | ||||||||||| ||| ||||| ||||||||
Sbjct 724 ATCCCAACCCCAATAATTAGACATTTCATAACTGGTGCAGAAGAAAG 770
> AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290-5628857
REVERSE LENGTH=1668
Length=1668
Score = 115 bits (62), Expect = 1e-24
Identities = 331/451 (73%), Gaps = 57/451 (13%)
Strand=Plus/Plus
Query 397 GGCTCTGGTTTTGTAATCTCGGGAAAGAGGATTCTTACGAATGCTCA--T-GT-A--G-T 449
||| |||| |||| |||| | |||| || ||||||||||| ||||| | || | | |
Sbjct 403 GGCACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462
Query 450 A-G-CTGATCAAACA-TCTGTTAAAGTCCGAAAG-CATGGTTCACCCAAA--AAGTACAA 503
| | |||||| ||| || || | || | |||| ||||| | | |||| || |||||
Sbjct 463 ATGAATGATCACACATTC-GTGGACGT-CAAAAGACATGG--CTCTCAAATCAAATACAA 518
Query 504 AGCAAAAGTTCAAGTGGTTGGTCAC--GAATGTGATTTGGCCATCTTGGAGATCGATAAC 561
||||||||||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 519 AGCAAAAGTTCAAAAGATT--TCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGT 576
Query 562 GAAGAGTTTTGGGAGGGTCTTA--CCCATTTGGAGCTGGGAGACATACC-C-TC-CCAAA 616
|| ||||||||| ||||| | | ||| || |||||| ||||||||||| | || ||||
Sbjct 577 GACGAGTTTTGGAAGGGTATGAATCCC-TT-GGAGCTTGGAGACATACCACCTCTCCAA- 633
Query 617 TGGATTCTGTGGCGGTCGTTGGCTATCCAGAAGGTGGTGATAGTATATCCGTTACGCAAG 676
| | | |||| | ||||| | | | | |||||| | ||| | | |||| |||
Sbjct 634 -GAAGT-TGTGTC---CGTTG--T-T---G--G-TGGTGAAAATATCTGCATTACAAAAG 679
Query 677 GTGTTGTG-TCGAGAGTTGTA-CTGAGAAGATAC-AGTCACAGCTCCACCGAGTTAT-TG 732
|| | || | ||||||| | || |||| |||| | | |||| | || ||| || ||
Sbjct 680 GTCTAGTACTT-AGAGTTGAAACT-AGAATATACGATT-ACAG-TG-AC--AGTGATCTG 732
Query 733 A-A--AATACAAATAGATGCAGCTATAAACTCTGGAAATAGTGGCGGTCCGGTAATCATG 789
| |||||| || |||||| |||| ||| || ||||||||| || ||||| || |||
Sbjct 733 CTATCAATACAGATTGATGCAACTATCAACGATGAAAATAGTGGTGGCCCGGTGATTATG 792
Query 790 GGAAACAAAGTGGTTGGTGTAGCATTTGAAA 820
||||||||||| |||||||| | || |||||
Sbjct 793 GGAAACAAAGTCGTTGGTGTGGTATATGAAA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5