BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907997
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65640.1 | Symbols: DegP4 | DegP protease 4 | chr1:24410851-... 2314 0.0
AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920... 226 5e-58
> AT1G65640.1 | Symbols: DegP4 | DegP protease 4 | chr1:24410851-24413527
REVERSE LENGTH=1572
Length=1572
Score = 2314 bits (1253), Expect = 0.0
Identities = 1454/1551 (94%), Gaps = 14/1551 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTTCCGGTTTCTTCAAACATTGGCTCGGTTCTGTAGCTTCTTGCTCATTTCGGTT 60
||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGTTGTTCCGATTTCTTCAAACACTGGCTCGGTTCTGCCGCTTCTTGCTCATTTCGGTT 60
Query 61 -ATGGGATCCCGTTTTTCTCCTTTGTTTCTTCTTGGTTACGTTAAATTGCAAGACGAAAA 119
|||| | |||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 61 CTTGGG-TTCCGTTTTTCTCCTTTGCTTCTTCTTGGTTACGTAAAACTGCAAGACGAAAA 119
Query 120 TCATCACAACAGCGAGTCAACACTTGCATCAGGGACTGACACAAAACAACCGGATGCGGC 179
| | ||||||||||||||| |||||||||||||||||||| |||||||||| || |||||
Sbjct 120 TAAGCACAACAGCGAGTCAGCACTTGCATCAGGGACTGACGCAAAACAACCAGAAGCGGC 179
Query 180 AGAAAACGTGACATCTTCTTCTATTGATTTTGCGGTAAATTCAGTGGTGAAGGTCTTCAC 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAAACGTGACATCTTCTTCCATTGATTTTGCGGTAAATTCAGTGGTGAAGGTCTTCAC 239
Query 240 TGTCTCTAGCGTGCCTAGCATTTTGCAACCTTGGCAAAATTGGCAGCAGCAAGAATCCAG 299
|||| |||| |||||||| ||||||||||||||| ||||||| ||||||||||||| |
Sbjct 240 CGTCTATAGCATGCCTAGCGTTTTGCAACCTTGGCGGAATTGGCCGCAGCAAGAATCCGG 299
Query 300 CGGCTCTGGATTTGTAATCTCGGGAAAGAAGATTCTTACGAACGCTCATGTAGTTGCTGA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CGGCTCTGGATTTGTAATCTCGGGAAAAAAGATTCTTACGAACGCTCATGTAGTTGCTGA 359
Query 360 TCACATATTTTTGCAAGTTAGAAAACATGGCTCACCTACAAATTACAAAGCAGAAGTTCG 419
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 360 TCACATATTTTTGCAAGTTAGAAAACATGGCTCACCCACAAAATACAAAGCACAAGTTCG 419
Query 420 AGCGGTTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGAAGAGTTTTGGGA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGATTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGAAGAGTTTTGGGA 479
Query 480 GGATCTGATCCCTTTGGAACTCGGAGAGATACCCTCTCTGGATGAATCTGTTGCCGT-TT 538
|||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 480 GGATATGATACCTTTGGAACTCGGAGAGATACCATCTCTGGATGAATCTGTGGCCGTATT 539
Query 539 TAGGCTACCCTCA-TGGTGGTGACAGCCTTTCCATTACTAAAGGTTATGTTTCTAGAGTT 597
| ||||| ||| | ||||||||| ||| |||| |||||||||||||||||||| |||||
Sbjct 540 T-GGCTATCCT-ACTGGTGGTGATAGCGTTTCTATTACTAAAGGTTATGTTTCGAGAGTC 597
Query 598 GAATATACACA-ATATGCTCACGGAGGCACTACACTACTCGCTATACAAACAGATGCGGC 656
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAATATACA-AGATATGCTCACGGAGGCACTACACTACTCGCTATACAAACAGATGCGGC 656
Query 657 TATAAACTCTGGAAATAGTGGTGGTCCAGCAATCATAGGAAATAAAACGGCAGGTGTAGC 716
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 TATAAACCCTGGAAATAGTGGTGGTCCAGCAATCATAGGAAATAAAATGGCAGGTGTAGC 716
Query 717 TTTTCAAAAATG-TACATCTTCAGATAATATAGGATACATAATCCCGACTCCAGTAATAA 775
|||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTTCAAAAA-GATCCATCTGCAGATAATATAGGATACATAATCCCGACTCCAGTAATAA 775
Query 776 CACATTTTTTAACTGCTGTTGAAGAAAATGGACAATATGGTGGTTTCTGCACGCTAGACC 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 AACATTTTTTAACTGCTGTTGAAGAAAATGGACAATATGGTGGTTTCTGCACGTTAGACA 835
Query 836 TTTCTTATCAACTTATGGAGAATTCTCAACTCCGTAATCATTTTAAGATGGGTCCTGAAA 895
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 836 TTTCCTATCAACTTATGGAGAATTCTCAACTCCGTAATCACTTTAAGATGGGTCCTGAAA 895
Query 896 TGACAGGGATTCTTATAAACGAAATAAACCCGCTGTCCGATGCTTACAAAAGGTTAAGAA 955
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 896 TGACAGGGATTCTTATAAACGAAATAAACCCTCTGTCGGATGCTTACAAAAGGTTAAGAA 955
Query 956 AAGATGACATCATTCTCGCAATTGATGATGTTCTTATAGGAAATGATGCGAAAGTTGCTT 1015
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 956 AAGATGACATCATTCTCGCAATTGATGATGTTCTTATAGGAAATGATGCTAAAGTTACTT 1015
Query 1016 TTCGGAACAAGGAACGAATCAATTTCAATCATTTTGTTTCGATGAAGAAATTAAATGAAA 1075
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 TTCGGAATAAGGAACGAATCAATTTCAATCATTTTGTTTCGATGAAGAAATTAGATGAAA 1075
Query 1076 CAGTCTTACTTAAAGTTTTGAGAGAGGGGAAAGAGCATGATTTTCACATCA-GTTTAAAA 1134
|||| |||||| ||||||||||||| |||||||||||||| || ||||| | | | ||||
Sbjct 1076 CAGTTTTACTTCAAGTTTTGAGAGATGGGAAAGAGCATGAGTTCCACATTATGGT-AAAA 1134
Query 1135 CCCGTGCCACCGCTGGTTCCAGTGCATCAGTATGATAAGCTTCCAAGTTATTACATATTC 1194
||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1135 CCCGTGCCACCCCTTGTTCCAGGGCATCAGTATGATAAGCTTCCAAGTTATTACATCTTC 1194
Query 1195 GCAGGCTTTGTATTTGTACCACTCACACAGCCATACATTGACAGTACTCTGATTTGCAAT 1254
||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 1195 GCAGGCTTTGTTTTTGTACCTCTTACACAGCCATACATTGACAGTACTTTGATTTGCAAT 1254
Query 1255 TGTGCAAATAAAAATATGCCTGAAAAGGCTGGTGAACAGCTTGTCATAATTTCGCAGGTG 1314
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 TGTGCAATTAAATATATGCCTGAAAAGGCTGGTGAACAGCTTGTCATAATTTCTTAGGTG 1314
Query 1315 TTAGCTGATGACATCAATGCAGGATACACTGATTTCAATGA-TTTAAAGGTAATAAAAGT 1373
|||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1315 TTAGCTGACGACATCAATGCAGGATACACTGATTTCAA-GAATTTGAAGGTAATAAAAGT 1373
Query 1374 GAATGGAGTTCAAGTGGAGAATCTAAAACATCTATCTGAATTGGTAGAGAAATGCTGCAC 1433
|||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 1374 GAATGGAGTTCAAGTGGAAAATCTAAAACATCTAACTGAATTGGTAGAGACATGCTGGAC 1433
Query 1434 CGAGGATTTAAGACTGGACTTAGAAAACGAGAAGGTTGTGGTCCTCAACTATGAAAATGC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 CGAGGATTTAAGACTGGACTTAGAAAACGAGAAGGTTGTGGTCCTCAACTATGCAAATGC 1493
Query 1494 TAAAGAAGCTACTTCTTTGATCTTAAAACTTCATAGAATACCATCGGCCAA 1544
||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1494 TAAAGAAGCTACTTCTTTGATCTTAGAACTGCATAGAATACCGTCGGCCAA 1544
> AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920-5632417
REVERSE LENGTH=1476
Length=1476
Score = 226 bits (122), Expect = 5e-58
Identities = 698/962 (73%), Gaps = 96/962 (10%)
Strand=Plus/Plus
Query 301 GGCTCTGGATTTGTAATCTCGGGAAAGAAGATTCTTACGAACGCTCA--T-GT--A---G 352
||||||||||||| |||| |||||||||| ||||||||||||||||| | || | |
Sbjct 259 GGCTCTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGGAGGGG 318
Query 353 TTG-CTGATCACATATTTTTGCAAGTTAGAAA-ACATGG--CTCACCTACAAATTACAAA 408
|| |||||||||||| |||| || | ||| |||||| |||| | |||| ||||||
Sbjct 319 ATGAATGATCACATATTCGTGCACGTCA-AAAGACATGGCTCTCAAGT-CAAA-TACAAA 375
Query 409 GCAGAAGTTCGAGCGGTTGGACATGAATGTGATTTGGCCATTTTGGAGATCGATAATGAA 468
||| |||||| | | ||| |||||| |||||||||||||| ||||||||||||| ||
Sbjct 376 GCAAAAGTTCAAAAGATTGCACATGAGTGTGATTTGGCCATCTTGGAGATCGATAGCGAC 435
Query 469 GAGTTTTGGGAGGATCTG-ATCCCTTTGGAACTCGGAGAGATACC-CTCTCTGGATG-AA 525
||||||||| ||| | || ||||| ||||| ||||||| ||||| | |||| ||| ||
Sbjct 436 GAGTTTTGGAAGGGTATGAATCCC-TTGGAGTTCGGAGACATACCGC-CTCTCAATGAAA 493
Query 526 TCTGT-TGCCGTT-TTAGGCTACCCTCATGGTGGTGACAGC-CTTTCCATTACTAAAGGT 582
| ||| | ||| || || || || | | |||||| | | | | | |||| ||||||
Sbjct 494 T-TGTAT-ATGTTGTT-GGTTATCCAAAAGCTGGTGA-AACAATATGCGTTACAAAAGGT 549
Query 583 -TATGTTTCTAGAGTTGAATA-TACACAA-TATGCTCACGGAG--GCACTACACTACTCG 637
| ||| || ||||| || | | | || || || || || ||||| |||||| |
Sbjct 550 GT-TGTAACTGGAGTT-AAAACTGGA-AATTA-CCT-TCGAAGTTCCACTAAACTACT-G 603
Query 638 -CTATACAAACAGATGCGGCTATAAACTCTGGAAATAGTGGTGGTCCAGCAATCATAGGA 696
| ||||| | || || ||| || ||||||||||||||| || | || | ||||
Sbjct 604 ACAATACATATTGACGCAACTACCTACGGTGGAAATAGTGGTGGCCCGGTTATTACAGGA 663
Query 697 AATAAAACG-GC-AGGTGTAGCT-TTTCAAAAAT-GTACATCTTCAGATAA-TATAGGAT 751
| ||| | | |||||| || |||| ||| | | | | ||| || || ||| |
Sbjct 664 GA-CAAA-GTCCTTGGTGTA-CTATTTC-AAATTCTTGGA-GATAAGAAAAGTACAGG-T 717
Query 752 -ACATAATCCCGACTCCAGTAATAACACATTTTTTAACTGCTGTTGAAGAAA-ATGGACA 809
||||||| || ||| |||| | |||||| |||||| || ||||||| | ||
Sbjct 718 GTTGTAATCCCAACCCCAATAATTAGACATTTCATAACTGGTGCAGAAGAAAGCT-CCCA 776
Query 810 -ATATGGTGGTTTCT-GCACGCTAGACCTT-TCTTATCAACT-TATGGAGAATTCTCAAC 865
| | | | |||| | || | |||| || || | || | | ||| | ||| |||||
Sbjct 777 CA-ACGCT-GTTTTTGGCTCACTAG-TTTTATCATGTC-AGTCAATGAAAAATGCTCAAA 832
Query 866 TCCGTAATCATTTTAAGATGGGTCCTGAAATGACAGGGATTCTTATAAACGAAATAAAC- 924
| |||||||||||||||||| | ||||||| |||||| |||||||||||| ||||||||
Sbjct 833 TTCGTAATCATTTTAAGATGAGCCCTGAAACGACAGGAATTCTTATAAACAAAATAAACT 892
Query 925 CCGCTGTCCGATGCTTACAAAAGGT-TAAGAAAAGATGACATCATTCTCGCAATTGATGA 983
| | ||| | ||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 893 CATC-GTCGGGGGCTCACAAAA-TTCTGAGAAAAGATGACATCATTCTCGCAATTGATGG 950
Query 984 TGTTCTTATAGGAAATGATGCGAAAGTTGCTTTTCGGAACAAGGAACGAATCAA-TTTCA 1042
||||| | | | | |||| || || || | ||||| || |||||
Sbjct 951 TGTTCC-A--G----T----C--------CTTTCCGAAATGAG-A-CGAAT-AAGTTTCA 988
Query 1043 ATCATTTTGTTTCGATGAAGAAATTAAATGAAAC-AGTCTTACTTAAAGTTT-TGAGAGA 1100
|||||||| |||| ||||||||| | |||||| | ||||| | |||| || | || ||
Sbjct 989 ATCATTTTATTTCTATGAAGAAACCAGATGAAAATA-TCTTAGT-AAAGGTTCTAAG-GA 1045
Query 1101 -GGGGAAAGAGCATGATTTTCAC-ATCAGTTTAAAACCCGTGCCACCGCTGGTTCCAGTG 1158
||||||||||||||| | || ||||||||||| || ||| ||| | ||| ||||
Sbjct 1046 AGGGGAAAGAGCATGAGTA-CAATATCAGTTTAAAGCCGGTGAAACCACACATTCAAGTG 1104
Query 1159 CATCAGTATGATAAGCTTCCAAGTTATTACATATTCGCAGGCTTTGTATTTGTACCACTC 1218
|| || ||| |||| |||||||||||||||||||||| || ||||| ||||| || |||
Sbjct 1105 CAACAATATTATAACCTTCCAAGTTATTACATATTCGGTGGTTTTGTTTTTGTGCCTCTC 1164
Query 1219 AC 1220
||
Sbjct 1165 AC 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5