BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908002
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGT... 466 3e-130
> AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGTH=2427
Length=2427
Score = 466 bits (252), Expect = 3e-130
Identities = 382/442 (86%), Gaps = 19/442 (4%)
Strand=Plus/Plus
Query 855 GAAAACCAACGAAATTGTCAAAATGTTTAAAGACCCAT-GTTGTCCGCTATCCATCAGCA 913
||||| ||| || ||||| ||||| ||||||||||| | |||||||| ||||||| || |
Sbjct 1557 GAAAATCAATGATATTGTGAAAATATTTAAAGACCC-TCGTTGTCCGGTATCCATAAGTA 1615
Query 914 TTGCAACTTTTGCAAAGAAGATGGTCTCCTCTAA-G-----CAAAACCCATTTGCATACA 967
||||| |||||||||||||||||||| || |||| | | |||||| ||||||| ||
Sbjct 1616 TTGCAGCTTTTGCAAAGAAGATGGTCACCACTAAGGAAAAACCAAACCCTTTTGCATGCA 1675
Query 968 GCTACGTCATTGTTTACGTC-ACATCGCAGTTTCCACAAGCTATGGATATTCTTCTTGCT 1026
|||| |||||||||||| || || || |||||||| |||| ||||||||||||||| ||
Sbjct 1676 GCTATGTCATTGTTTACATCAAC-TCACAGTTTCCCCAAGTTATGGATATTCTTCTCGCG 1734
Query 1027 GAATTCCTCAAAGCTTGCATTTACACCGTCCCAAAGCATATTGTAAACTCACAGTCACAG 1086
||||||| |||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 1735 GAATTCCACAAAGCTTGCATTTACACTGTCCCAAAGCATATTGT-AA---AC--TCACAG 1788
Query 1087 TCAGCTTGTGATTCAGAAGCATATGAACGCCTAGGTTATATAATGAGGCTCTATGGTGCA 1146
|||||||| |||||||| |||||||||||||||| || ||||||||||||||| ||||||
Sbjct 1789 TCAGCTTGGGATTCAGACGCATATGAACGCCTAGATTCTATAATGAGGCTCTACGGTGCA 1848
Query 1147 CTTGTCCAGACCGATATTCGAGGTGGCAATGCTACTAACATTCATGGGATAGAACATGGA 1206
||||| ||||||||||| || | |||||||||||||||| ||||||||||||||||||||
Sbjct 1849 CTTGTTCAGACCGATATCCGCGTTGGCAATGCTACTAACGTTCATGGGATAGAACATGGA 1908
Query 1207 TGGGCTTGGTTGGCCCGGTTCCTTAACAAAATCTCAGCTAACAACAGAGTTACTGCAACC 1266
||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| ||
Sbjct 1909 TGGGCTTGGTTAGCCCGGTTCCTTAACAAAATCCCAGC---CAACAGAGCCACTGCGACA 1965
Query 1267 GCCTTAAACGCCTTTCTCCAGA 1288
||||| ||| ||||||||||||
Sbjct 1966 GCCTTGAACTCCTTTCTCCAGA 1987
Score = 313 bits (169), Expect = 4e-84
Identities = 201/216 (93%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 536 AGGAGGAAGCCAGGAGG-AGAGAAAGGGCTCATCAAGAAGAGAAAATACGTCAAGAAAAA 594
||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AGGAGGAGGCCAGGAGGAAG-GAAAGGGCTCATCAAGAAGAGAAAATACGTCAAGAAAAA 1176
Query 595 GCTCGCACAGAGGCTGAAATGCTAGCaaaaatcagagctgaagaagaaaagaaagaagtt 654
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GCTCGCGCAGAGGCTCAAATGCTAGCAAAAATCAGAGCTGAAGAAGAAAAGAAAGAAGTT 1236
Query 655 gagagaaaggcagccaaagaagtag-tggaaaaggaagaagCAGGTCGCAAAGCTACCGa 713
|||||||||||||||| |||||||| || ||||| ||| ||||| |||||||||| ||||
Sbjct 1237 GAGAGAAAGGCAGCCAGAGAAGTAGCTGAAAAAG-AAGTAGCAGATCGCAAAGCTGCCGA 1295
Query 714 aaaaaaaCTTGCAGAAGAGAAGGCTGTGATAGAGAG 749
| |||||||||| ||| |||||||||||||||||||
Sbjct 1296 ACAAAAACTTGCGGAACAGAAGGCTGTGATAGAGAG 1331
Score = 274 bits (148), Expect = 2e-72
Identities = 188/207 (91%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 326 GTCTGGCTGCGAGTGCCCTATATGAGGTGATTAATGACCACCTAACCGATATCAAGGAGG 385
||||||||| |||||||||||||||||| || || ||||||| |||||| |||||||| |
Sbjct 818 GTCTGGCTGAGAGTGCCCTATATGAGGTTATCAACGACCACCAAACCGAAATCAAGGACG 877
Query 386 ACATTAGGAATCAAGTCA-CAGTTGTTGAAACGGAAATAGTGAATGAGATTGAAACGTCT 444
|||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 878 ACATTAGGAATCAAGT-ATCAGTTGTTGAAACAGAAATAATGAATGAGATTGAAACGTCT 936
Query 445 CGGTCTGCAATAGCCGGGGTTGAAAAGTACAGTGAAG-CTCGAAAAGAAGTAGAACGGAA 503
| ||||| |||||| |||||||||||||||||| || |||| |||||||| ||||||||
Sbjct 937 CTCTCTGCCATAGCCCGGGTTGAAAAGTACAGTG-AGACTCGGAAAGAAGTTGAACGGAA 995
Query 504 ACTTGATCTTCAATATCAGCGAAAAGT 530
|||||||||||||||||||||||||||
Sbjct 996 ACTTGATCTTCAATATCAGCGAAAAGT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5