BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908020

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25030.1 | Symbols:  | RING/U-box superfamily protein | chr3...   448    3e-125


> AT3G25030.1 | Symbols:  | RING/U-box superfamily protein | chr3:9122197-9123502 
FORWARD LENGTH=1115
Length=1115

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 326/364 (90%), Gaps = 15/364 (4%)
 Strand=Plus/Plus

Query  44   AGGAAGTC-TCGTCGGTAGAGGGAA-GAGTTCAGCTAGGAGCTGTATTGGCAGAGGAGAG  101
            |||||| | |||||||| ||||||| || ||| | |||||||||| ||||||||||||||
Sbjct  642  AGGAAG-CTTCGTCGGTGGAGGGAAGGA-TTCGGTTAGGAGCTGTGTTGGCAGAGGAGAG  699

Query  102  AGCATTATCGGCTAGAGAAGAGGAAACGCAG-CTGGAGAGGGAAGTGGAGCCGGCGAGGA  160
            ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct  700  AGCATTATCGGCTAGAGAAGAGGAAACGCCGGC-GGAGAGGGAAGTGGAGCCGGCGAGGA  758

Query  161  TGTCTTTAATGGAGTTGTTGGAAGAGAATGAAGGGCAAATTAGTTTGGTAAGTGTTGACG  220
            |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct  759  TGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTGTCGACG  818

Query  221  GAGAGGCGGAGGAGGTGGCGGCGGCGGAGACTGTGGCGGTGGCGGAGATAAGTTGTTGTG  280
            ||||||||||||||| || |||||| | ||| | | |||   ||||||||||||||||||
Sbjct  819  GAGAGGCGGAGGAGGAGGTGGCGGCAGTGAC-G-G-CGG---CGGAGATAAGTTGTTGTG  872

Query  281  TGTGTATGAA-AGAAGCAAAGGAGCGGCGTTTATTCCATGTGGTCATACGTTTTGTAGGT  339
            ||||||||   |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  873  TGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGGT  932

Query  340  TGTGTTCAAGAGAG-TTTCGAGTTCAAAGAGGAGACTGTCCTCTTTGTAATACAACAATT  398
            ||||||| |||||| ||| | |||||||||||| |||||||||| |||||||| ||||||
Sbjct  933  TGTGTTCTAGAGAGCTTTGG-GTTCAAAGAGGAAACTGTCCTCTCTGTAATACCACAATT  991

Query  399  TTAG  402
            ||||
Sbjct  992  TTAG  995


 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 44/45 (98%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTGAAGACGAAG  45
            ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  180  ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTAAAGACGAAG  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5