BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908020 Length=402 Score E Sequences producing significant alignments: (Bits) Value AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3... 448 3e-125 > AT3G25030.1 | Symbols: | RING/U-box superfamily protein | chr3:9122197-9123502 FORWARD LENGTH=1115 Length=1115 Score = 448 bits (242), Expect = 3e-125 Identities = 326/364 (90%), Gaps = 15/364 (4%) Strand=Plus/Plus Query 44 AGGAAGTC-TCGTCGGTAGAGGGAA-GAGTTCAGCTAGGAGCTGTATTGGCAGAGGAGAG 101 |||||| | |||||||| ||||||| || ||| | |||||||||| |||||||||||||| Sbjct 642 AGGAAG-CTTCGTCGGTGGAGGGAAGGA-TTCGGTTAGGAGCTGTGTTGGCAGAGGAGAG 699 Query 102 AGCATTATCGGCTAGAGAAGAGGAAACGCAG-CTGGAGAGGGAAGTGGAGCCGGCGAGGA 160 ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 700 AGCATTATCGGCTAGAGAAGAGGAAACGCCGGC-GGAGAGGGAAGTGGAGCCGGCGAGGA 758 Query 161 TGTCTTTAATGGAGTTGTTGGAAGAGAATGAAGGGCAAATTAGTTTGGTAAGTGTTGACG 220 |||| || |||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 759 TGTCATTGATGGAGTTGTTGGAAGAGAATGAAGGGCAAATGAGTTTTGTAAGTGTCGACG 818 Query 221 GAGAGGCGGAGGAGGTGGCGGCGGCGGAGACTGTGGCGGTGGCGGAGATAAGTTGTTGTG 280 ||||||||||||||| || |||||| | ||| | | ||| |||||||||||||||||| Sbjct 819 GAGAGGCGGAGGAGGAGGTGGCGGCAGTGAC-G-G-CGG---CGGAGATAAGTTGTTGTG 872 Query 281 TGTGTATGAA-AGAAGCAAAGGAGCGGCGTTTATTCCATGTGGTCATACGTTTTGTAGGT 339 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 873 TGTGTATGGTTAGAAGCAAAGGAGCTGCGTTTATTCCGTGTGGTCATACGTTTTGTAGGT 932 Query 340 TGTGTTCAAGAGAG-TTTCGAGTTCAAAGAGGAGACTGTCCTCTTTGTAATACAACAATT 398 ||||||| |||||| ||| | |||||||||||| |||||||||| |||||||| |||||| Sbjct 933 TGTGTTCTAGAGAGCTTTGG-GTTCAAAGAGGAAACTGTCCTCTCTGTAATACCACAATT 991 Query 399 TTAG 402 |||| Sbjct 992 TTAG 995 Score = 78.7 bits (42), Expect = 4e-14 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTGAAGACGAAG 45 ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 180 ATCTGCTCTTGGATTTCGGATTCTCCTGCAAACGTAAAGACGAAG 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19001209122 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5