BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908029

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53690.1 | Symbols:  | RING/U-box superfamily protein | chr3...   276    5e-74
  AT2G26455.1 | Symbols:  | pseudogene, similar to Ubiquitin conj...   198    1e-50


> AT3G53690.1 | Symbols:  | RING/U-box superfamily protein | chr3:19898788-19900065 
REVERSE LENGTH=1193
Length=1193

 Score =  276 bits (149),  Expect = 5e-74
 Identities = 169/179 (94%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGATTCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAG  60
            |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||
Sbjct  679  ATGAAAGATTCGGAGTGTCCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAG  738

Query  61   TGGCATCCAGAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGA  120
            |||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  739  TGGCATCCGGAGATGACTTGCGAGGAGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGA  798

Query  121  GATGATATTTTGCTCGCGACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG  179
            |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  799  GATGATATTTTGCTTGCGACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG  857


> AT2G26455.1 | Symbols:  | pseudogene, similar to Ubiquitin conjugating 
enzyme 7 interacting protein 4 (UbcM4- interacting 
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518: 
Zinc finger, C3HC4 type (RING finger), signature 
and Pfam:PF01485 IBR domain; blastp match of 25% identity 
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating 
enzyme 7 interacting protein 4 (UbcM4- interacting 
protein 4) (RING finger protein 144). (Mouse) {Mus musculus} 
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 150/171 (88%), Gaps = 2/171 (1%)
 Strand=Plus/Plus

Query  10   TCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCA  69
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| 
Sbjct  790  TCGGAGTGTCCTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCG  849

Query  70   GAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATT  129
            |||||||| |||||||||||||| |||||||| ||||||||||||| |||||  ||||| 
Sbjct  850  GAGATAACATGCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATA  909

Query  130  TTGCTCGC-GACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG  179
            ||| | |  ||  |||||| |||  ||||| |||| |||||||||||||||
Sbjct  910  TTGTT-GAAGAATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG  959



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5