BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908032
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c... 575 1e-163
> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative |
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321
Score = 575 bits (311), Expect = 1e-163
Identities = 408/452 (90%), Gaps = 18/452 (4%)
Strand=Plus/Plus
Query 62 AAAGGTTTACCTTCTCATCTCAGTTTCT-CCCTGAGAAGGCAGGAGATGAAGCATTCTTA 120
||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 304 AAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGATGAAGCATTTTTA 363
Query 121 ACGGCTTTAAGAGAGTTGCAATCTGCGCTTTGTATTACAGCAGGTTATGGGAATATTTTG 180
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 364 TCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTATGGGAATATTTTG 423
Query 181 CCTACTAAGTTCCTTAAGATTCCGCCATTATTTAATGGTTTAGGGACAGTGAACATGCAC 240
|||||||||||||||||||||||| || | | |||||||||||||| |||
Sbjct 424 CCTACTAAGTTCCTTAAGATTCCG---GTA---CA-----T-GGGACAGTGAACATACAC 471
Query 241 CCAAGTTTGTTGCCCCTTTACCGTGGTGCTGCTCCAGTTCAAAGAGCATTACAGGATGGT 300
||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 472 CCAAGTTTGCTGCCGCTGTACCGTGGTGCAGCTCCAGTTCAAAGAGCATTACAGGATGGT 531
Query 301 GTCCCTGAAACAGGAGTAACATTAGCATTTACGGTGGTGCGTAAGTTAGATTCAGGGCCA 360
||||| |||||||||||| ||||||||||||| | ||||||||||||||| ||||||||
Sbjct 532 GTCCCGGAAACAGGAGTATCATTAGCATTTAC--T-GTGCGTAAGTTAGATGCAGGGCCA 588
Query 361 GTGATTGCCTCTAAGAGGTTTCAAGTGGATGATCTAATTAAGGCACCAGAACTGCTCTCG 420
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 589 GTGATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAGGCACCAGAACTACTCTCG 648
Query 421 TTCCTAGTTTCTGTA-GTTCTAAGCTTCTTATCCGT-AACTTCCCTTGATATTTGATGGG 478
|||||| |||||| | ||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 649 TTCCTATTTTCTGAAGGTTCTAATCTTCTTATCCGTGAACTTCCCTCGATATTTGATGGG 708
Query 479 TCCGCAAAATCAAAAGCAGTTCCCCAAGATGA 510
||||||||||||||||||| ||||||||||||
Sbjct 709 TCCGCAAAATCAAAAGCAGCTCCCCAAGATGA 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5