BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908040
Length=3177
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65810.1 | Symbols: | P-loop containing nucleoside triphosp... 4438 0.0
> AT1G65810.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:24477043-24480728
REVERSE LENGTH=3153
Length=3153
Score = 4438 bits (2403), Expect = 0.0
Identities = 2930/3181 (92%), Gaps = 50/3181 (2%)
Strand=Plus/Plus
Query 10 TTATGGGTATCAAAAGAAACCAAGAAGAAGGAAAGAATCATCAAAGGAAGAGATTTAGTC 69
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 10 TTATGGGTAGCAAAAGAAACCAAGAAGAAGGAAAAAATCATCAAAGGAAGAGATTTAGTC 69
Query 70 GATGTTGTCTTCTCTTGGTCTCTTCGTGATGTGTTAAGCTCAAATCTTTACAAAGGAAAG 129
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| ||
Sbjct 70 GATGTTGTCTTCTCTTGGTCTCTTCGTGATGTGTTAAACTCAAATCTATACAGAGGACAG 129
Query 130 GTAGGGAAGATTCCTAACACATTTACATCAACCAAAGAGTATTTTGAGTCATTTGTTAAT 189
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 GTAGGGAAGATTCCTAACACATTCACATCAACCAAAGAGTATTTTGAGTCATTTGTTAAA 189
Query 190 CCGATTATTGAAGAGACACATGCTGATTTGTTGTCAAGTATGGGAACGATACGTCGTGCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CCGATTATTGAAGAGACACATGCTGATTTGTTGTCAAGTATGGGAACGATACGTCGTGCA 249
Query 250 CAAGCTTTCAAGTTTTGGGAAATCAAGCCAGGGAAAGATTTTAAACCTCCTAAGGATCTT 309
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 250 CAAGCTTTTAAGTTTTGGGAAATCAAGCCAGGGAAAGATTTTAAACCTCCTAGGGATCTT 309
Query 310 TATTATGAGGTTACTTTGCAGATGGTGAATGA-TAATGTGGCCAATGGAGGTCAAAATCT 368
|||||||||||||||||||||||| ||||| | || || |||| ||||||||||||||
Sbjct 310 TATTATGAGGTTACTTTGCAGATGACAAATGAGT-ATATGACCAAAGGAGGTCAAAATCT 368
Query 369 GCTAGAGTTTAATGATCTTATTGCAGTGACAGATAAGAGGCCTATTCGAATCGATGACTT 428
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 GTTAGAGGTTAATGATCTTATTGCAGTGACCGATAAGAGGCCTATTCGAATCGATGACTT 428
Query 429 GAGATGTTC-CAATGAGCCTCATTTGCTAGCTCTTGTTTGTGGGGTTAATGAAAATAATC 487
||||| ||| | |||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 429 GAGATTTTCTC-ATGAGCCTTATTTGCTAGCTCTTGTTTGTGGAGTGAATGAAAATAATC 487
Query 488 CACATTTGATAACTATTTTGGCTTCTAAACCTATTATTTTCGAGGATGATGACGATA-AG 546
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
Sbjct 488 CACATTTGATAACTATTTTGGCTTCTAAGCCAATTATTTTCGACGATGATGACGATATA- 546
Query 547 CGAACGTCGACAAAGAGAGGAAAGGGTGAGAGGAAACGCTTAAGTTTCTTTGGGGTTAAT 606
||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 547 AAAACGTCGTCGAAGAGAGGAAAGGGTGAGAGGAAAAGCTTAAGTTTCTTTGGGGTTAAT 606
Query 607 TTGATCAACATGATGACAAATATTCGTATTTGGAGC-GCGTTGCATCCACATCCAGAAGG 665
|||||||||||||||||||||||||||||||||| | |||||||||||| | || |||||
Sbjct 607 TTGATCAACATGATGACAAATATTCGTATTTGGA-CTGCGTTGCATCCAAACCCCGAAGG 665
Query 666 AGGAAACTTGAAGCTTATTTCAAGAGTACTTCAAAGCAACAATGAGGTTGATGGAGGAAG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGGAAACTTGAAGCTTATTTCAAGAGTACTTCAAAGCAACAATGAGGTTGATGGAGGAAG 725
Query 726 TTGTGTTGCTTGTAAAGAAAACAGTGAGAATGTAGTGTCAGATCACTCAGCGCGGATGCT 785
||||||| ||||||||||||||||||||| |||||| |||||| ||||||| || |||||
Sbjct 726 TTGTGTTTCTTGTAAAGAAAACAGTGAGAGTGTAGTCTCAGATTACTCAGCTCGAATGCT 785
Query 786 ACGTTCATTCAAACTGAATTCATCTCAAGAGGATGCGATTTTGA-GTTGTCTAGAAGCTA 844
||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |||||||
Sbjct 786 ACGTTCATTTAAACTGAATTCATCTCAAGAGGACGCGATTTT-ACGTTGTCTTGAAGCTA 844
Query 845 AAAGTTGCT-ACCACTCCAACAATATCAAACTTATATGGGGACCCCCGGGCACGGGGAAG 903
||||||| | |||| |||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 845 AAAGTTG-TAACCATTCCAACAATATCAAACTTATTTGGGGACCACCGGGCACAGGGAAG 903
Query 904 ACGAAAACAACAAGTGTTCTGCTTTTGAACCTTCTGAAAATGAGATGCAGGACATTGACT 963
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 904 ACGAAAACAACAAGTGTTCTGCTTTTGAACTTTCTGAAAATGAGATGCAGGACATTGACT 963
Query 964 TGTGCTCCAACTAACATAGCTGTTTTGGAAGTTTGTTCAAGACTTGTGAAATTAGTCTCT 1023
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 TGTGCTCCAACTAACATAGCTGTTTTGGAAGTTTGTTCAAGGCTTGTGAAATTAGTCTCT 1023
Query 1024 GAGTCATTGAGGTTTGGTGGTTATGGTCTTGGAGATATTGTGTTGTTTGGTAATAAAGAA 1083
||||| |||||||||| ||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 1024 GAGTCTTTGAGGTTTGATGGGTATGGTCTCGGAGATATAGTGTTGTTTGGCAATAAAGAA 1083
Query 1084 AGGATGAAAATCGATGACCGGGAAGATCTTTTCGATGTCTTCCTTGAGTACAGAGTTGAG 1143
||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 1084 AGGATGAAAATCGATGATCGCGAAGATCTTTTCGATGTCTTCCTTGAGTACCGAGTTGAT 1143
Query 1144 GAGCTTTATAGATGCTTTATGGCTATGACTGGATGGAGAGCAAATGTTAACCGTATGATC 1203
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1144 GAGCTTTATAGATGTTTTATGGCTCTGACTGGATGGAGAGCAAATGTAAACCGTATGATC 1203
Query 1204 TGTTTGCTCAGTGATCCGCAACGA-GAGTATCGTCAGTTCAATTCCGTAAATAAAACAAG 1262
|||||||||||||||||| ||| | |||| ||| || ||||| |||||||||| ||||
Sbjct 1204 TGTTTGCTCAGTGATCCGAAAC-ACGAGTTTCGCCAATTCAAATCCGTAAATACAACACT 1262
Query 1263 TCTTTCTTTTAAGGAATTTGTGGAGGAGAGGCTGAGCAGACTAAGAAATGATCTACAGCA 1322
||| || |||||||| ||||||||||||||||| || ||||||||| ||||||| || ||
Sbjct 1263 TCTCTCGTTTAAGGATTTTGTGGAGGAGAGGCTTAGTAGACTAAGATATGATCTGCATCA 1322
Query 1323 TCAGTTTACAACTTTGTGTCTTCATTTACCAACTACTTTGCTCTCCTTTCGGGTGGCGGA 1382
||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 1323 TCAGTTTACAACTTTGTGTCTCCATTTACCAACTTCTTTGCTCTCCTTTAGGGTGGCGGA 1382
Query 1383 AAAAATGAATCAGACTAATGATCTCCTTAGAGACATTTCGGTTTCTGATGTTATGGGAGA 1442
||| ||||| ||||||||| ||||||||||| |||| ||| ||||||||| || ||||
Sbjct 1383 AAAGATGAACCAGACTAATAATCTCCTTAGAAACATCGCGGCTTCTGATGTCAT--GAGA 1440
Query 1443 TGGTAAGAAGTCTTGTCATGGAAGAAGGAAATATAACCGTAAAGATACCGGTGACGAAAG 1502
| | | | | | ||||||||| ||||||||| | |||||||| | || | |
Sbjct 1441 --G-ATG--G---T-T-ATGGAAGAATGAAATATAAGCTTAAAGATA-C--TG--G--TG 1483
Query 1503 ATTGGAGAATGATTCAAGAGA-GCAAGATTGTCTGAAGATGTTGACATCGATTTCTATAA 1561
| | || |||||||||||| | |||||||||| || |||||||||||||||||||||| |
Sbjct 1484 A-T-GAAAATGATTCAAGA-ACGCAAGATTGTTTGGAGATGTTGACATCGATTTCTATGA 1540
Query 1562 GTATCAATCTTCCGGATTTTATATCAAAGTTTGAACTT-AAAATACTCTGCTTAGACAAT 1620
||||||| ||||||||||||||||| ||||| |||||| |||| |||||||||||| |||
Sbjct 1541 GTATCAAACTTCCGGATTTTATATCCAAGTTCGAACTTCAAAA-ACTCTGCTTAGATAAT 1599
Query 1621 GCATATCTGCTT-TTCTGCACAGCATCAAGCTCTGCTAAGTTACACATGAGTAGTCCAAT 1679
||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1600 GCATATCTG-TTGTTTTGCACAGCATCAAGCTCTGCTAGGTTACACATGAGTAGTCCAAT 1658
Query 1680 ACAGCTTCTTGTGATTGACGAAGCTGCTCAGTTAAAAGAATGCGAATCAGCGATACCTTT 1739
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1659 ACAGCTTCTTGTGATTGATGAAGCTGCTCAGTTAAAAGAATGCGAGTCAGCGATACCATT 1718
Query 1740 GCAGCTTCCAGGACTTCAAAACGCGATTTTGATCGGTGATGAGAAGCAATTGCCTGCAAT 1799
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GCAGCTTCGAGGACTTCAACATGCGATTTTGATCGGTGATGAGAAGCAATTGCCTGCAAT 1778
Query 1800 GATTAAAAGCAAGATTGCTTCAGAAGCTGATCTTGGGAGGAGTTTGTTTGAAAGATTGGT 1859
||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1779 GATAAAAAGCAATATTGCTTCAGAGGCTGATCTTGGGAGGAGTTTGTTCGAAAGATTGGT 1838
Query 1860 GTTGTTGGGGCATAATAAACAGTTGCTGAACATGCAATACCGAATGCATCCGTCGATTAG 1919
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1839 GTTGTTGGGACATAATAAACAGTTGCTGAACATGCAGTACCGAATGCATCCTTCGATTAG 1898
Query 1920 TATTTTCCCGAACAGAGAGTTTTACGATATGAAGATTTTGGATGCTCCTTCTGTGAGACT 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TATTTTCCCGAACAGAGAGTTTTACGATATGAAGATTTTGGATGCTCCTTCTGTGAGACT 1958
Query 1980 GAGAAGTTATGAGAAAAAGTTTCTTCCTGAGAAAATGTTTGGACCTTACTCTTTCATCAA 2039
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1959 GAGAAGTTATGAAAAAAAGTTTCTTCCTGAGAAAATGTATGGACCTTACTCTTTTATCAA 2018
Query 2040 CATAGCATATGGAAGAGAACAGTTTGGAGAAGGATATAGTTCGAAAAACGTAGTGGAGGT 2099
|||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 2019 CATAGCTTATGGAAGAGAACAGTTTGGTGAAGGATATAGTTCGAAAAACCTAGTGGAAGT 2078
Query 2100 CTCTGTTGTGGCTGAGATAGTGTCAAAGCTTTATTCAGTATCAAGAAAGA-CGGGAAGAT 2158
||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||
Sbjct 2079 CTCTGTTGTGGCTGAGATAGTCTCAAAGCTTTACTCAGTATCAAGAAAGACCGGG-AGAA 2137
Query 2159 CGATCAGCGTAGGTGTTATTTCACCTTACAAAGCTCAAGTGTTTGCAATCCAAGAAAGGA 2218
|||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2138 CGATAAGCGTAGGGGTGATTTCACCTTACAAAGCTCAAGTGTTTGCGATCCAAGAAAGGA 2197
Query 2219 TAGGCGAAAAGTATAATACCGAAGGGACATTCACAGTGAGTGTTAGGTCCGTAGATGGGT 2278
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2198 TAGGCGAAAAGTATAATACCGAAGGGACATTTACAGTGAGTGTTAGGTCTGTAGATGGGT 2257
Query 2279 TTCAAGGCGGTGAAGAAGATATCATTATAATCTCAACTGTCAGGTCTAACGATAAAGGAG 2338
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 2258 TTCAAGGTGGTGAAGAAGATATCATTATAATCTCAACAGTCAGGTCTAACGGTAATGGAG 2317
Query 2339 CAATCGGTTTTCTATCTAACCAACAACGAACTAATGTAGCACTCACTCGCGCGAGGTATT 2398
| || |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2318 CTATTGGTTTTTTATCTAACCAACAAAGAACTAATGTAGCACTCACTCGTGCGAGGTATT 2377
Query 2399 GCTTATGGATTCTTGGAAACGAGGCGACTTTAACGAACAATAAATCAGTGTGGAGGCAGT 2458
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 2378 GCTTATGGATTCTTGGAAACGAAGCGACTTTAACGAACAATAGATCAGTGTGGAGACAGT 2437
Query 2459 TAGTAG-TCGATGCGCAAGCACGAAACTGTTTCCATGATGCAGAAGAAGATGAATCATTA 2517
| |||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2438 TGGTAGAT-GATGCGAAAGCACGAAACTGTTTCCATAATGCAGAAGAAGATGAATCATTA 2496
Query 2518 GCTCAGTGTATTGAAAGATCAACAACAGCACTTGATGATCTTAATAAGCTTCAAAACAAG 2577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 GCTCAGTGTATTGAAAGATCAACAACAGCACTTGATGATCTTAATAAGCTTCAAAACAAG 2556
Query 2578 AAGCTTATTTCCTTCGAAAATTCGATATGGAAGGTTTGGCTTAGCAATGAGTTCTTGAAA 2637
||||||||||| || || ||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 2557 AAGCTTATTTCTTTTGAGAATTCGATATGGAAGGTTTGGCTCAGCTACGAGTTCTTGAAA 2616
Query 2638 TCTCTGGAGACGATCATAGACTCTGAAATTAACAAAAGAGTTATGAACTTTTTGGAGAAG 2697
|||||||| |||||| ||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 2617 TCTCTGGAAACGATCGTAGACTCGGAAATTAATAAAAGAGTTATGAGCTTTTTGGAGAAG 2676
Query 2698 TTATCTAATGGGAAAGAGCTGCTTCAACAAGAGGATGAGATTGAGAGTGAGTATCTGTTG 2757
|||||||||||||||||||| | || ||||||| |||| |||| |||||| || |||||
Sbjct 2677 TTATCTAATGGGAAAGAGCT--T-CATCAAGAGGTTGAGTTTGAAAGTGAGAATTTGTTG 2733
Query 2758 AGACAACA-GAAGATTGATGATGGCTTAAGCCTTATTTGGGCAATAGACATTTTCAAGAA 2816
|||||||| || | |||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 2734 AGACAACATGA-GTTTGATGATGGCTTAAGTCTTATTTGGGCGATAGATATTTTCAAGAA 2792
Query 2817 AAATAATTACCATGTCCAAGTTTTGAAGATCTGGCAGGTTTTGCCATCTTCTGATGTTTC 2876
|||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2793 TAATAATCAACATGTACAAGTTTTGAAGATCTGGCAGGTTTTGCCATCTACTGATGTTTC 2852
Query 2877 TCGCGCCATGGAACATCTAGAGAAACATTACAAGCGATACACGAAAGTCAAGATAAAACG 2936
||| | | |||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 2853 TCGTGTTACAGAACATCTAGAGAAACATTACAGGCGATACACGAAAGGCAAGATAAGTCG 2912
Query 2937 GTGTCGATACATATGCTCTCAAGGAGATTTAGTTGTACCAATGCGATGGCCGGTTGATTC 2996
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2913 GTGTCGATACATATGCTCTCAAGGTGATTTAGTTGTACCAATGCAATGGCCGGTTGATTC 2972
Query 2997 CAATTCTTGTTTAAAGAAGGACATTGTAAACGACGTTTCAAGATCATTTGCATTGCTAAG 3056
||||||||||| |||||| || ||||||| ||| ||||| ||||||||||| ||||| ||
Sbjct 2973 CAATTCTTGTTCAAAGAAAGATATTGTAAGCGATGTTTCGAGATCATTTGCGTTGCTCAG 3032
Query 3057 TGTTGTGGATGAAGAAACTGTGACTCCCAAACCAATCAAGAAACAAGTGAAGCTAAAGAA 3116
||||||||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 3033 TGTTGTGGAAGAGGAAACTGTGAGTCCTAAACCTATCAAGAAACAAGTGAAGCTAAAGAA 3092
Query 3117 AGTGCGGAAGATTAGAAGAAAGGTTCAACTTTCAACATCTAACTCCAAAGATCCTAAGTG 3176
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3093 ACTGTGGAAGATTAGAAGAAAGGTTCAACTTTCAACATCTAACCCCAAAGATCCTAAGTG 3152
Query 3177 A 3177
|
Sbjct 3153 A 3153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158025870450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5