BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908045 Length=423 Score E Sequences producing significant alignments: (Bits) Value AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 551 2e-156 > AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16760908-16764276 FORWARD LENGTH=1620 Length=1620 Score = 551 bits (298), Expect = 2e-156 Identities = 385/426 (90%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59 ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| |||| Sbjct 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736 Query 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119 ||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| ||| Sbjct 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796 Query 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178 ||||||| || |||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855 Query 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238 |||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915 Query 239 TGAGAGGGGAGTGGGAGAATTCTGCGAGATCATCTCCATCAGAAGAAGCCACCAGCCTTT 298 | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCAGAAGAAGCCACCAGCCTTT 975 Query 299 TAAGGTGGGAGCAGCTTAA-AACGCT-T-CAATCAAAGA-ACAACAAGGCTCTATCACTG 354 |||||||||| || ||||| || ||| | ||||| |||| | |||||||||||||||||| Sbjct 976 TAAGGTGGGAACAACTTAAGAAAGCTCTTCAATCGAAGAGA-AACAAGGCTCTATCACTG 1034 Query 355 CGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATTGATTTGGAGGTC 414 ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1035 CGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATTGATTTGGAGGTT 1094 Query 415 TCCAAA 420 || ||| Sbjct 1095 TCAAAA 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20056831851 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5