BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908054
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65890.1 | Symbols: AAE12 | acyl activating enzyme 12 | chr1... 1027 0.0
AT1G65880.1 | Symbols: BZO1 | benzoyloxyglucosinolate 1 | chr1:... 1022 0.0
AT1G68270.1 | Symbols: | AMP-dependent synthetase and ligase f... 867 0.0
AT1G66120.1 | Symbols: | AMP-dependent synthetase and ligase f... 518 4e-146
> AT1G65890.1 | Symbols: AAE12 | acyl activating enzyme 12 | chr1:24512457-24514659
REVERSE LENGTH=1926
Length=1926
Score = 1027 bits (556), Expect = 0.0
Identities = 659/710 (93%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTTG 60
|||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 49 ATGGATAATTTGGCGTTATGTGAAGCAAACAATGTTCCTCTAACTCCCATAACGTTCTTG 108
Query 61 AAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTTC 120
||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 109 AAGAGAGCTTCGGAGTGTTATCCGAATCGAACTTCGATAATATACGGAAAAACTCGTTTC 168
Query 121 ACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAAC 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 169 ACTTGGCCTCAGACCTATGACCGTTGCTGTCGTCTAGCCGCTTCTCTCATATCTCTTAAT 228
Query 181 ATCGCCAAGAACGATGTGGTATCCGTTGTGGCCCCAAACATACCGGCCATATATGAGATG 240
|||| |||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 229 ATCGGCAAGAACGATGTGGTATCCGTTGTTGCTCCAAACACACCGGCCATGTATGAGATG 288
Query 241 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGACGCA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 289 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCTATCAACACTCGTCTAGACGCA 348
Query 301 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGACCGCAGT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 349 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATTTTATTCATATACCGCAGT 408
Query 361 TTTGAGCCCTTGGCTCGAGAAATTCTCCA-TCTACTATCATGTGATGACTCAAACCTAAA 419
|||||||| |||||||||||||| ||||| | || |||||| ||| ||||||||||||||
Sbjct 409 TTTGAGCCATTGGCTCGAGAAATCCTCCAGT-TATTATCATCTGAAGACTCAAACCTAAA 467
Query 420 CTTGCTGGTCATATTTATTGACGAGAACGATTACCCTAAAAGGGTTTCGTGTGACGAGTT 479
||||| |||||||||||| |||||| |||| ||||||||||||||||| || ||||
Sbjct 468 CTTGCCGGTCATATTTATCCACGAGATTGATTTCCCTAAAAGGGTTTCGTCCGAGGAGTC 527
Query 480 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTCCTTGGTGGCACGTATGTT 539
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 528 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTTGTTGTTGGCACGCATGTT 587
Query 540 CCGTATTCAAGACGAGCATGATCCAATCTCATTAAACTACACATCGGGTACAACTGCCGA 599
| |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 588 CTGTATTCAAGACGAGCATGATCCAATCTCTTTAAACTACACATCGGGTACCACAGCCGA 647
Query 600 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGCTCATTAAGCGTGATTAT 659
||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 648 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTAAGCACATTAAGCGCGATTAT 707
Query 660 TGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCTACCTATGT 709
|||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 708 TGGTTGGGAAATGGGGACATGCCCTGTCTACCTTTGGACTCTGCCTATGT 757
> AT1G65880.1 | Symbols: BZO1 | benzoyloxyglucosinolate 1 | chr1:24508633-24510742
REVERSE LENGTH=1748
Length=1748
Score = 1022 bits (553), Expect = 0.0
Identities = 658/710 (93%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTTG 60
|||||| | ||||| |||||||||| |||||| ||||||||||| ||||| |||||||||
Sbjct 6 ATGGATGATTTGGCATTATGTGAAGCAAACAATGTTCCTCTAACCCCCATGACGTTCTTG 65
Query 61 AAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTTC 120
||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 66 AAGAGAGCTTCAGAGTGTTATCCAAATCGAACTTCAATAATCTACGGAAAAACTCGTTTC 125
Query 121 ACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAAC 180
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 126 ACTTGGCCTCAGACCTATGACCGTTGTTGTCGTCTAGCCGCTTCTCTAATCTCTCTTAAC 185
Query 181 ATCGCCAAGAACGATGTGGTATCCGTTGTGGCCCCAAACATACCGGCCATATATGAGATG 240
||| ||||||||||||||||||| ||| |||| ||||||| ||| ||| | ||||| |||
Sbjct 186 ATCTCCAAGAACGATGTGGTATCAGTTATGGCTCCAAACACACCCGCCTTGTATGAAATG 245
Query 241 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGACGCA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 246 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCTATCAACACTCGTCTAGACGCA 305
Query 301 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGACCGCAGT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 306 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCCTAGACCGCAGT 365
Query 361 TTTGAGCCCTTGGCTCGAGAAATTCTCCATCTACTATCATGTGATGACTCAAACCTAAAC 420
|||||| |||||||| |||||| |||||| || |||||| ||| |||||||||||||||
Sbjct 366 TTTGAGGCCTTGGCTAGAGAAAGCCTCCATTTATTATCATCTGAAGACTCAAACCTAAAC 425
Query 421 TTGCTGGTCATATTTATTGACGAGAACGATTACCCTAAAAGGGTTTCGTGT-GACGAGTT 479
|||| |||||||||||| |||||||||||| |||||||||| ||| | | || |||||
Sbjct 426 TTGCCGGTCATATTTATCCACGAGAACGATTTTCCTAAAAGGGCTTCAT-TCGAGGAGTT 484
Query 480 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTCCTTGGTGGCACGTATGTT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 485 AGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTCGATGGTGGCACGCATGTT 544
Query 540 CCGTATTCAAGACGAGCATGATCCAATCTCATTAAACTACACATCGGGTACAACTGCCGA 599
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 545 CCGTATTCAAGACGAGCATGATCCAATCTCCTTAAACTACACATCGGGTACCACTGCCGA 604
Query 600 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGCTCATTAAGCGTGATTAT 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 605 CCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGCACATTAAGCGCGATTAT 664
Query 660 TGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCTACCTATGT 709
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 665 TGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCTGCCTATGT 714
> AT1G68270.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:25588191-25590254 REVERSE LENGTH=1608
Length=1608
Score = 867 bits (469), Expect = 0.0
Identities = 633/713 (89%), Gaps = 7/713 (1%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTTG 60
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATAACATGGAGTTATGTGAAGCAAACAACGTTCCTCTAACGCCCATAACTTTCTTG 60
Query 61 AAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTTC 120
||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 61 AAGAGAGCTTCAGAGTGTTATCCCAATCGAACATCAATAATTTACGGACAAACTCGTTTC 120
Query 121 ACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAAC 180
|||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACTTGGCCACAAACCTATGACCGTTGTTGTCGTCTAGCCGCTTCTCTCATCTCTCTTAAC 180
Query 181 ATCGCCAAGAACGATGTGGTATCCGTTGTGGCCCCAAACATACCGGCCATATATGAGATG 240
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 181 ATCGCCAAGAACGATGTGGTATCCGTTGTGGCCCCAAACACACCAGCCATTTATGAGATG 240
Query 241 CACTTTGCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGACGCA 300
||||||||||||||||||||||||||||| |||||||| ||||| |||||| | ||||||
Sbjct 241 CACTTTGCCGTTCCCATGGCTGGAGCTGTCCTTAACCCTATCAATACTCGTTTGGACGCA 300
Query 301 ACATCCATTGCCGCAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGACCGCAGT 360
||||| ||| || |||| |||||||||||| |||||||||| ||||||||| |||| |
Sbjct 301 ACATCTATTACCACAATTCTCCGCCACGCCCAGCCCAAGATATTATTCATACACCGAAAC 360
Query 361 TTTGAGCCCTTGGCTCGAGAAATTCTCCATCTACTATCATGTGATGACTCA-AACCTAAA 419
||||||||||||||||||||||| |||||||||||||||||||| |||| | ||| ||||
Sbjct 361 TTTGAGCCCTTGGCTCGAGAAATCCTCCATCTACTATCATGTGACGACTTACAAC-TAAA 419
Query 420 CTTGCTGGTCATATTTATTGACGAGAACGATTACC-CTAAAAGGGTTTCGTGTGACGAGT 478
||||||||||||||||||||||||| || ||| || ||||||||||||| | || ||||
Sbjct 420 CTTGCTGGTCATATTTATTGACGAGTACAATT-CCGCTAAAAGGGTTTCATCCGAGGAGT 478
Query 479 TAGACTACGAGTGTCTCATCCAGAGGGGAGAGCCTACGCCCTCC-TTGGTGGCACGTATG 537
||||||||||| ||||||| |||| ||||||||||||| | ||| ||||| | | ||||
Sbjct 479 TAGACTACGAGAGTCTCATTCAGATGGGAGAGCCTACGTC-TCCGTTGGTTGAAAATATG 537
Query 538 TTCCGTATTCAAGACGAGCATGATCCAATCTCATTAAACTACACATCGGGTACAACTGCC 597
|||||||| ||| | ||||| ||||| ||||| |||||||||| || ||||| || ||
Sbjct 538 TTCCGTATACAAAATGAGCAAGATCCCATCTCCCTAAACTACACGTCAGGTACCACGGCT 597
Query 598 GACCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTGCTCATTAAGCGTGATT 657
|||||||||||||| ||||||||||| ||||||||||||||| ||| ||| | || |||
Sbjct 598 GACCCAAAAGGTGTGGTGATTAGCCATCGAGGAGCATATTTGACCTCGTTAGGTGTAATT 657
Query 658 ATTGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTCTA-CCTATGT 709
||||||||||||||| | |||||||||||||||||||||| | | |||||||
Sbjct 658 ATTGGTTGGGAAATGAGTACCTGCCCTGTCTACCTTTGGATTTTTGCCTATGT 710
> AT1G66120.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:24612620-24614805 FORWARD LENGTH=1854
Length=1854
Score = 518 bits (280), Expect = 4e-146
Identities = 586/729 (80%), Gaps = 40/729 (5%)
Strand=Plus/Plus
Query 1 ATGGATAACT-TGGCGTTATGTGAAGTAAACAACGTTCCTCTAACGCCCATAACGTTCTT 59
|||||||| | | | ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGATAA-TCTAGTGTTATGTGAAGCAAACAATGTTCCTCTAACGCCCATAACGTTCTT 79
Query 60 GAAGAGAGCTTCCGAGTGTTATCCCAATCGAACTTCGATAATCTACGGACAAACTCGTTT 119
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 80 GAAGAGAGCTTCGGAGTGTTATCCCAACCGAACTTCGATAATCTACGGGCAAACTCGCTT 139
Query 120 CACTTGGCCTCAGACCTATGAACGTTGTTGTCGTCTAGCCGCTTCTCTCATAACTCTTAA 179
||||||||||||||| ||||| ||||| ||||||||||| ||||||||| | |||||||
Sbjct 140 CACTTGGCCTCAGACTTATGACCGTTGCTGTCGTCTAGCTGCTTCTCTCCTCTCTCTTAA 199
Query 180 CATCGCCAAGAA-CGATGTGGTATCCG-TTGTGGCCCCAAACATACCGGCCATATATGAG 237
|||| || ||| ||| || || || | || ||||||||||| |||| ||||| || |||
Sbjct 200 CATCACCC-GAAACGACGTTGTCTC-GATTTTGGCCCCAAACGTACCTGCCATGTACGAG 257
Query 238 ATGCACTTT-GCCGTTCCCATGGCTGGAGCTGTACTTAACCCAATCAACACTCGTCTAGA 296
||||||||| || ||||||||| | ||||| ||||||||||| || ||||| ||||| ||
Sbjct 258 ATGCACTTTAGC-GTTCCCATGACCGGAGCCGTACTTAACCCCATTAACACCCGTCTTGA 316
Query 297 CGC-AACATCCATTGCCG-CAATCCTCCGCCACGCCAAGCCCAAGATCTTATTCATAGAC 354
||| || | |||| ||| || || ||||||||||| |||| ||||||||||| | |||
Sbjct 317 CGCCAAAA-CCATAGCCATCATTC-TCCGCCACGCCGAGCCAAAGATCTTATTTGTGGAC 374
Query 355 --CGCAGTTTTGAGCCCTTGGCTCGA-GAAATTCTCCATCT-ACTATC-A-TGTGATGAC 408
|| ||||| | || ||| || | ||| | |||| ||| | || | | | | | |
Sbjct 375 TACG-AGTTT-GCTCCTTTGA-TCCAAGAAGTCCTCCGTCTCA-TACCCACT-T-ACCAG 428
Query 409 TCA-AACCTAAACTTGCTGG-TCATATTTATTGACGAGAACGATTACC-CTA-AAAGGGT 464
||| |||| | | || || ||||||| ||| |||||| |||| || ||| |||| |
Sbjct 429 TCACAACCGCATCC-GC-GGATCATATTAATTAACGAGATTGATT-CCACTACAAAGCCT 485
Query 465 TTCGTGTGACGAGTTAGACTACGAGTGTCTCATCC-AGAGGGGAGAGCCTACGCCCTCCT 523
||| | | ||||||||||||||| ||||||||| | | || ||| |||||||| ||||
Sbjct 486 TTC-TCCAAGGAGTTAGACTACGAGGGTCTCATCCGAAAAGG-AGAACCTACGCCATCCT 543
Query 524 TGGTG-GCACGTATGTTCCGTATTCA-AGACGAGCATGATCCAATCTCATTAAACTACAC 581
| ||| | ||||||||| | || | |||||||||| || ||||| || ||||||||
Sbjct 544 CC-TCCGCAAGCATGTTCCGTGTCCACA-ACGAGCATGACCCTATCTCCTTGAACTACAC 601
Query 582 ATCGGGTACAACTGCCGACCCAAAAGGTGTTGTGATTAGCCACCGAGGAGCATATTTGTG 641
|| ||||| || || |||||||||||||| ||||||||||||| |||||| || ||| |
Sbjct 602 GTCAGGTACCACGGCAGACCCAAAAGGTGTGGTGATTAGCCACCAAGGAGCCTACTTGAG 661
Query 642 CTCATTAAGCGTG-ATTATTGGTTGGGAAATGGGGACCTGCCCTGTCTACCTTTGGACTC 700
| | || ||| | |||||||| ||||||||||||| | |||||||||||| ||||| |
Sbjct 662 CGCTTTGAGC-TCCATTATTGGCTGGGAAATGGGGATTTTCCCTGTCTACCTCTGGACAC 720
Query 701 TACCTATGT 709
|||||||||
Sbjct 721 TACCTATGT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5