BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908056
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65910.1 | Symbols: anac028, NAC028 | NAC domain containing ... 2961 0.0
> AT1G65910.1 | Symbols: anac028, NAC028 | NAC domain containing
protein 28 | chr1:24520791-24524164 REVERSE LENGTH=2094
Length=2094
Score = 2961 bits (1603), Expect = 0.0
Identities = 1804/1902 (95%), Gaps = 9/1902 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGTTTCAATGCCTCCTGGTTTCCGGTTTCATCCAACAGACGAAGAGCTTGTC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 57 ATGGCTCCTGTTTCAATGCCTCCAGGTTTCCGGTTTCATCCAACAGACGAAGAGCTTGTC 116
Query 61 ATATACTACCTCAAGCGAAAGATTAATGGTCGGACGATCGAGTTAGAGATAATTCCGGAG 120
||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct 117 ATATACTACCTCAAGCGAAAGATTAATGGTCGGACTATTGAGTTAGAGATAATACCCGAG 176
Query 121 ATTGATCTTTACAAATGTGAACCTTGGGATTTACCCGGGAAGTCCTTGCTGCCAAGTAAA 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 177 ATTGATCTTTACAAATGCGAACCTTGGGATTTACCTGGGAAGTCCTTGCTGCCAAGTAAA 236
Query 181 GACCTAGAATGGttttttttCAGTCCTCGAGACCGGAAATATCCAAACGGATCAAGAACA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GACCTAGAATGGTTCTTTTTCAGTCCTCGAGACCGGAAATATCCAAACGGATCAAGAACA 296
Query 241 AACCGGGCGACAAAAGCCGGTTACTGGAAAGCCACCGGGAAAGATCGTAAAGTGACTTCA 300
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACCGGGCGACCAAAGCAGGTTACTGGAAAGCCACCGGGAAAGATCGTAAAGTGACTTCA 356
Query 301 CATTCGCGGATGGTTGGAACAAAGAAAACATTAGTTTATTACCGAGGAAGAGCGCCTCAT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CATTCACGGATGGTTGGAACAAAGAAAACATTAGTTTATTACCGAGGAAGAGCGCCTCAT 416
Query 361 GGCTCTCGTACCGATTGGGTCATGCACGAGTACCGTCTTGAAGAACAAGAATGTGATTCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 GGCTCTCGTACCGATTGGGTCATGCACGAGTACCGTCTTGAAGAACAAGAATGTGACTCT 476
Query 421 AAATCCGGCATACAGGATGCCTATGCACTTTGTCGAGTATTTAAGAAGAGTGCTTTAGCC 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAATCCGGTATACAGGATGCCTATGCACTTTGTCGAGTATTTAAGAAGAGTGCTTTAGCC 536
Query 481 AACAAGATAGAAGAACAACACCATGGTACGAAGAAGAATAAAGCAACGACCAATAGCGAA 540
||||| || ||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 537 AACAAAATTGAAGAACAACACCATGGTACGAAGAAGAACAAAGGAACGACTAATAGTGAA 596
Query 541 CAATCTACTTCTAGTACTTGTTTGTATTCTGATGGAATGTATGAAAACCTCGAAAACTCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAATCTACTTCTAGTACTTGTTTGTATTCTGATGGAATGTATGAAAACCTCGAAAACTCG 656
Query 601 GGGTATCCGGTCTCCCCCG-GTACAGGAGGCTTAACTCAACTTGGTAATAATTCGTCGTC 659
|||||||| ||||| || | | |||||||||||||||||||| |||||||||||||||||
Sbjct 657 GGGTATCCAGTCTCACCTGAG-ACAGGAGGCTTAACTCAACTCGGTAATAATTCGTCGTC 715
Query 660 AGATATGGAAACGATAGAGAACAAATGGAGTCAGTTTATGTCGCATGACACGTCCTTCAA 719
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGATATGGAAACGATAGAGAATAAATGGAGTCAGTTTATGTCGCATGACACGTCCTTCAA 775
Query 720 CTTCCCACCTCAGTCTCAATATGGAACAATCTCATATCCTCCCTCGAAGGTTGATATAGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTCCCACCTCAGTCTCAATATGGAACAATCTCATATCCTCCCTCGAAGGTTGATATAGC 835
Query 780 GTTAGAGTGTGCAAGACTACAAAATCGTATGTTGCCACCGGTTCCACCACTTTACGTAGA 839
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 836 GTTAGAGTGTGCAAGACTACAAAATCGTATGTTGCCACCAGTACCACCACTTTACGTAGA 895
Query 840 AGGTCTCACACACAGTGAATATTTGGGAAACAACGTTGCTAACGATACAGATGAAATGTT 899
|||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 896 AGGTCTCACACACAATGAATATTTTGGAAACAATGTAGCTAACGATACAGATGAAATGTT 955
Query 900 GAGCAAGATTATAGCATTGGCTCAAGCCTCCCATGAGCCACGAAACAGTCTAGACTCGTG 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 956 GAGCAAGATTATAGCATTGGCTCAAGCCTCACATGAGCCACGAAACAGTCTAGACTCATG 1015
Query 960 GGACGGTGGTTCTGCTTCCGGGAACTTCCATGGAGACTTTAACTATTCCGGAGAAAAAGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGACGGTGGTTCTGCTTCCGGGAACTTCCATGGAGACTTTAACTATTCCGGAGAAAAAGT 1075
Query 1020 CTCATGCATAGAGGCAAACGTGAAGGCTGTAGATATGCAAGAACATTATGGGAGTTATAA 1079
||||||| ||||||| |||||| |||||||||||||||||||||| ||| || || |||
Sbjct 1076 CTCATGCCTAGAGGCGAACGTGGAGGCTGTAGATATGCAAGAACACCATGTGAATTTTAA 1135
Query 1080 GGAAGAAAGACTTGTTGAAAACTTGAGATGGGTAGGAGTATCAAGCAAGGAACTAGAAAA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 GGAAGAAAGACTTGTTGAAAACTTGAGATGGGTAGGAGTATCAAGCAAGGAACTTGAAAA 1195
Query 1140 GAGCTTCGTTGAAGAACACTCAACGGTAGTTCCTATAGAAGATATTTGGAGCTATCATAG 1199
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1196 GAGCTTCGTTGAAGAACACTCAACGGTAATTCCTATAGAAGATATTTGGAGATATCATA- 1254
Query 1200 A-GATAATCAAGAACAAGAACATCAAGATCAAGATGGTATGGACGTTAACAACAACAATG 1258
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 ATGATAATCAAGAACAAGAACATCATGATCAAGATGGTATGGACGTTAACAACAACAATG 1314
Query 1259 GAGATGTGGATGATGCTTTCACACTTGAGTTCTCGGAAAACGATCATAACGAGAATCTTT 1318
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1315 GAGATGTGGATGATGCTTTCACACTCGAGTTTTCGGAAAACGAACATAACGAGAATCTTT 1374
Query 1319 TGGACAAGAGCGATCATGACACAACGAGTTCCTCATGTTTTGAGGTGATAAAAAAGGTTG 1378
||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1375 TGGACAAGAACGATCATGAGACAACGAGTTCCTCATGTTTTGAGGTGGTAAAAAAAGTTG 1434
Query 1379 AGGTTAGCCATGGATTGTTTGTCACAACTCGTCAGGTAACCAATACATTCTTCCAAAAGA 1438
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1435 AGGTTAGCCATGGATTGTTTGTCACAACTCGTCAGGTAACCAACACATTCTTCCAACAGA 1494
Query 1439 TCGTACCTTCGCAAACCGTTATAGTTTATATAAATCCAACGGGCGCCAATGAATGTTGTC 1498
| ||||| ||||||||||||||||||||||||||||| |||| | |||||| |||||||
Sbjct 1495 TAGTACCATCGCAAACCGTTATAGTTTATATAAATCCGACGGATGGCAATGAGTGTTGTC 1554
Query 1499 ATAATATGACATCAAAAGAAGAGGTTCCTGTCCGTAAAAAGATCAATCCGC-AACTCAAT 1557
||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| || ||||
Sbjct 1555 ATAGTATGACATCAAAAGAGGAGGTTCATGTCCGTAAAAAGATAAATCCGCGAA-TCAAC 1613
Query 1558 GGAGTAGGCTCAACATTTCTTGTACCATGGAGAAAATTTGTGTACGTTATTGGCTTCAAT 1617
|||||| |||||||| |||||| || |||||||||||| | | | ||||||||||||| |
Sbjct 1614 GGAGTAAGCTCAACAGTTCTTGGACAATGGAGAAAATTCGCGCATGTTATTGGCTTCATT 1673
Query 1618 CCTATGCTTCTATTGATGCGTTGTGTTCATCAAGGAGGTAACTCTAACAAAAACAGAAGC 1677
||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1674 CCTATGCTTCTATTGATGCGTTGTGTTCATC--G-AGGTAACTCTAACAAAAACAGAGGC 1730
Query 1678 AGTGAATGTTACTCAAGGCAGCCTAAGAAAGGAAATTGTAACAATCTGGGCACAATACTC 1737
|||||| ||||||| |||||||||| || |||| |||||||||||| ||| |||||||||
Sbjct 1731 AGTGAAGGTTACTCGAGGCAGCCTACGAGAGGAGATTGTAACAATCGGGGAACAATACTC 1790
Query 1738 ATGATGGAAAATGCTGTAGTGagaagaaaattttcgaagaagaagaaagagaaaaaCATG 1797
||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||
Sbjct 1791 ATGATGGAAAATGCTGTCGTGAGAAGAAAAATTTGGAAGAAGAAGAAAGAGAAAAATATG 1850
Query 1798 GTTGATGAACAAGGTTTTCGGTTTCAAGATAGTTTCGTGTTGAAGAAGTTGGGGCTTTCT 1857
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1851 GTTGACGAACAAGGTTTTCGGTTTCAAGATAGTTTCGTATTGAAGAAGTTGGGGCTTTCT 1910
Query 1858 CTTGCTATCATCTTAGCTGTTTCTACCATAAGTCTTATTTGA 1899
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 CTTGCTATCATCTTAGCTGTTTCTACCATAAGTCTTATTTGA 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5