BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908058
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42232.1 | Symbols: | Defensin-like (DEFL) family protein |... 307 3e-83
> AT5G42232.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:16884962-16885309 FORWARD LENGTH=246
Length=246
Score = 307 bits (166), Expect = 3e-83
Identities = 216/240 (90%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 1 TGGATATCACCAA-AAAGATGCTTATCGTATTTCTTCTCACTATTCTTTTTGTCAAATCA 59
||| ||||||||| ||| |||||| ||||||||||||| || |||||||||| | |||
Sbjct 2 TGGCTATCACCAAGAAA-ATGCTTGTCGTATTTCTTCTTGCTTTTCTTTTTGTGACATCG 60
Query 60 TCGGTTCATTGTTCTGATAGCACTCTTGGTGTTGGAATTAAGCAAAATTGGaaaaaaaTG 119
|||||||||||||||||||||||||||||| ||||||| || ||| ||||| ||||||||
Sbjct 61 TCGGTTCATTGTTCTGATAGCACTCTTGGTATTGGAATCAACCAAGATTGG-AAAAAATG 119
Query 120 CTTCAGCCCAGCCCCGTGTCAAAAAGCAGGGACGCAAGGCTGCATGGAGTTTTGTAGAAA 179
||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 120 CTTCAGCCCAGACCCGTGTAAAAAAGCAGGGACGCAAGGCTGCATGGAGTTCTGTAGAAC 179
Query 180 TATAAGCTTTTTACTATTTGGTGAATGTACTACTAATTCTGATCAATGTTGTTGTGTGAC 239
||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||
Sbjct 180 TATAAGCTTTTTATTATTCGGTGAATGTACTTCTAAACCTGATCAATGTTGTTGTGTGAC 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5