BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908062
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocit... 287 6e-77
> AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate
dehydrogenase | chr1:24538886-24542129 FORWARD LENGTH=1703
Length=1703
Score = 287 bits (155), Expect = 6e-77
Identities = 233/269 (87%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 115 AGGGCTAGGTTAGATGACAACACAAAACTTTTGGAGTTCACCGAAAAGCTTGAAGCCGCT 174
||||||| ||||||||||||| ||||||| ||||| ||||| || ||||| |||||||||
Sbjct 1229 AGGGCTAAGTTAGATGACAACGCAAAACTCTTGGATTTCACTGAGAAGCTGGAAGCCGCT 1288
Query 175 TGTGTTGGGACAGTGGAGTCAGGGAAAATGACCAAAGATATTGCACTCATCATTCACGGC 234
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1289 TGTGTTGGGACAGTGGAGTCAGGGAAAATGACCAAAGATCTTGCACTCATCATTCACGGC 1348
Query 235 TCATGGCTTTC-A----CACTT-CATGAACACAGAGAATTTCATCGATGTAGTCGTTGAT 288
||| |||||| | ||| | | ||||||||||| | |||||||||| ||||| || |
Sbjct 1349 TCAAAGCTTTCGAGGGACACGTACCTGAACACAGAGGAGTTCATCGATGCAGTCGCTGCT 1408
Query 289 GAGCTCAAAGCAAGACTAGCATCAAAGCTTAAGAAACTGAAGAAATTTGGTAAAAATTTG 348
|||||||||| |||||| || | ||||||||||||||||||||| ||||||| || |
Sbjct 1409 GAGCTCAAAGAAAGACT--CA--AT-GCTTAAGAAACTGAAGAAATTGGGTAAAA-TTCG 1462
Query 349 AACGTCTCAGTTCCTCAGTCTTTTATCTG 377
||||||||||||||| ||| | |||||||
Sbjct 1463 AACGTCTCAGTTCCTAAGTGTCTTATCTG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17945586393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5