BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908066
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62336.1 | Symbols: | unknown protein; Has 30201 Blast hits... 261 7e-69
> AT3G62336.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23068160-23068363
REVERSE LENGTH=204
Length=204
Score = 261 bits (141), Expect = 7e-69
Identities = 160/169 (95%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 180 GATGAAAACCATCATCGCATCTTTCAATTGTCAAATCCATCATGAGATCATTAAGGAGAA 239
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 36 GATGAAAAACATCATCGCATCTTTCAATTGTCAATTCCATCATGAGATCATTAAGGAGAA 95
Query 240 AATAGGTTTCGCGATATGGATGATCGGTGAATA-TTCATTATCGTTTTCAGATATCGAAA 298
||| |||||| ||||||||||||| |||||||| |||||||||| ||||||| |||||||
Sbjct 96 AATCGGTTTCACGATATGGATGATTGGTGAATATTTCATTATCGATTTCAGAGATCGAAA 155
Query 299 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTCTCCCTAA 347
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 156 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTTTCCCTAA 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5