BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908068
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family prote... 2318 0.0
> AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family protein
| chr3:23062819-23065721 REVERSE LENGTH=1829
Length=1829
Score = 2318 bits (1255), Expect = 0.0
Identities = 1382/1443 (96%), Gaps = 9/1443 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCACTAGATCGGACCCAGAGCTTGATGATGACTTTAGTGAAATCTACAAGGAG 60
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGGAAAGCACTAGATCAGATCCAGAGCTTGATGATGACTTTAGTGAAATCTACAAGGAG 103
Query 61 TATACTGGTCCTGCAAGTACTGTGACCAACAACACTATCCAAGACAAAGACAAACCTATC 120
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 104 TATACTGGTCCTGCAAGTGCTGTGACCAACAACAATATCCAAGACAAAGACAAACCTGTC 163
Query 121 AAACAACGTTCTGAAGAAAGATGTGAT---GAAGAAGAGCAACTACCTGACCCCAATTCT 177
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 164 AAACAACGTTCTGAAGAAAGATGTGATGAAGAAGAAGAGCAACTTCCTGATCCCAACTCT 223
Query 178 GTACCAACTGATTTCACTAGCCGAGAAGCTAAGGTTTGGGAGGCTAAATCCAAAGCTACT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 224 GTACCAACTGATTTCACTAGCCGTGAAGCTAAGGTTTGGGAGGCTAAATCCAAAGCTACT 283
Query 238 GAGAGGAATTGgaagaagagaaaagaagaagaaATGATCTGTAAAATATGTGGCGAGTCT 297
|||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 284 GAGAGGAATTGGAAGAAGAGGAAAGAGGAAGAGATGATCTGTAAAATTTGTGGCGAGTCT 343
Query 298 GGTCATTTTACTCAGGGATGTCCATCTACACTTGGTGCCAACAGGAAGTCTCAAGAATTC 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 GGTCATTTTACTCAGGGATGTCCATCTACACTTGGTGCCAATAGGAAGTCTCAAGAATTC 403
Query 358 TTTGAAAGGGTACCAGCTAGGGACAATAATGTGAGAGTTTTGTTTACTGAGCAAGTTATA 417
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 404 TTTGAAAGGGTACCAGCTAGGGACAATAATGTGAGAGTTTTGTTTACTGAGAAAGTTATG 463
Query 418 GAAAGTATTGAAAGGGAGACCGGCTGCAAGATTAAAATGGATGAGAAGTTCATAATTGTT 477
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 464 GAAAGTATTGAAAGGGAGACCAGCTGCAAGATTAAATTGGATGAGAAGTTCATAATTGTT 523
Query 478 AGTGGCAAGGACAGATTAATCTTGAGGAAAGGTGTTGATGCTGTTCACAAGGTTAAGGAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTGGCAAGGACAGATTGATCTTGAGGAAAGGTGTTGATGCTGTTCACAAGGTTAAGGAG 583
Query 538 GATGGTGAGATGAAAAGTTCTTCTGTTTCCCACAGGAGCAGATCGAGGTCACCTAGGCGA 597
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 584 GATGGTGAGATGAAAAGTTCTTCTGTTTCTCACAGGAGCAGATCCAGGTCACCTAGGCGA 643
Query 598 ACTTCTGTTGGTCCACCACGTGCTCGAAACTCTGAACCTCAAAGGCAGCACCCT-CCATC 656
||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 644 ACTTCTGTTGGACCATCACGTGCTCGAAACTCTGAACCTCAAAGGCAGCA-GCTGCCATC 702
Query 657 ACATGGTTCATCAAGTTTCCCAGAGCGCTCTGGAAGGCAAGATAAGTTTGTGGATAATCG 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACATGGTTCGTCAAGTTTCCCAGAGCGCTCTGGAAGGCAAGATAAGTTTGTGGATAATCG 762
Query 717 TGTGCGCGAAGAGAATCGTATACGTGAGAATCAGCGAAATGTTTCC-CGAGGATCACCAC 775
| | |||||||||| |||| | |||||||||||| |||| | |||| |||||||||||||
Sbjct 763 TTTCCGCGAAGAGACTCGTGTTCGTGAGAATCAGAGAAACG-TTCCTCGAGGATCACCAC 821
Query 776 AAGCTTATGGTAGTGACAGAGCTCGGAGTCGTTCCACACATTCGAAATCTCCAGGGAGAC 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 822 AAGCTTATGGTAGTGACAGAGCTCGGAGTCGTTCTACACATTCGAAATCTCCAGGGAGAC 881
Query 836 CACGTTATAGTGGATGGGATAAACCGTATGATAGGCAAAAGTCTGAGGTGAGTGGTTATA 895
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 CTCGTTATAGTGGATGGGATAAACCGTATGATAGGCAAAAGCCTGAGGTGAGTGGTTATA 941
Query 896 GGTCTGAAAGATGGGATCAGGAGAGAATGGGTGGCTCCAGCGATATTCAGGTGAGACATC 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 GGTCTGAAAGATGGGATCAAGAGAGAATGGGTGGCTCCAGCGATATTCAGGTGAGTCATC 1001
Query 956 AGTTTGAACGCCCTCCTTTCCCACAGACTTTAGAAGAACTAGAATTGGAATATACGAGGG 1015
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1002 AGTTTGAACGCCCTCCTTTCCCACAAACGTTAGAAGAACTAGAATTGGAATATACGAGGG 1061
Query 1016 ATGCAATGGAGCTTGaaaa-aaaGTGCGATAAAGAAGAAGATGAGGAGAACATCAAGCAT 1074
||||| ||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||
Sbjct 1062 ATGCATTGGAGCTTGAAAAGAAA-CGCGATAAGGAAGAAGATGAGGAGAACAACAAGCAT 1120
Query 1075 CGTGAGACAATCCGGGAACTGAGAGAGAGTTACATGAAGAAACTGGCTGGGCTAAGGGGT 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1121 CGTGAGACAATCCGGGAACTGAGAGAGAGTTACATGAAGAAACTGGCTGGACTAAGGGGT 1180
Query 1135 ATGAATGCTAAACAATGGGATGAATTCCTTCAACTGGATGCTCAGAGACGTCAACAGCAA 1194
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1181 ATGAATGCTAAACAATGGGATGACTTCCTTCAACTCGATGCTCAGAGACGTCAACAGCAA 1240
Query 1195 GCACGGCAGCAAAACTCTGGCCTGAATTATGGTAACTATAGACAGTTTCCTCCTTATGCT 1254
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1241 GCACGGCAGCAAAACTCTGGTCTGAGTTATGGTAACTATAGACAGTTTCCTCCTTATGCT 1300
Query 1255 GAGTTTGATGATGGCTACTCTTCAAATCCTCCTCCCTATGGTGGAAACAATGTGCCAATG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1301 GAGTTTGATGATGGCTACTCTTCAAATCCTCCTCCCTATGGTGGAAACAATATGCCAATG 1360
Query 1315 GATTCCAAGGGAAGATATCCAAATCATGGAGATAACTATTCTTCAAGGCATCAAGACAAC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GATTCCAAGGGAAGATATCCAAATCATGGAGATAACTATTCTTCAAGGCATCAAGACAAC 1420
Query 1375 AATTATGGTGGGTTCCAACGCCAGAGACGTGAGGACTATGGAAAAGCCTACAATCGTTAT 1434
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1421 AATTATGGTGGGTTCCAACGCCAGAGACGTGAAGAATATGGAAAAGCCTACAATCGTTAT 1480
Query 1435 TAG 1437
|||
Sbjct 1481 TAG 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5