BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908082
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56100.1 | Symbols: MRLK, IMK3 | meristematic receptor-like ... 1033 0.0
> AT3G56100.1 | Symbols: MRLK, IMK3 | meristematic receptor-like
kinase | chr3:20816931-20819517 REVERSE LENGTH=2303
Length=2303
Score = 1033 bits (559), Expect = 0.0
Identities = 630/664 (95%), Gaps = 5/664 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAGAGGAAGTCTTGCCACATTCCTTCATGCAAGAGGACCAGATGTTCATATCAAT 60
|||||||||||||| |||||||| || || |||||||||||||||||||| |||||||||
Sbjct 1498 ATGTCTAGAGGAAGCCTTGCCACGTTTCTCCATGCAAGAGGACCAGATGTACATATCAAT 1557
Query 61 TGGCCTACAAGGATGAGCTTAATAAAGGGAATGGCTCGTGGCTTGTTCTACCTTCACACA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1558 TGGCCTACAAGGATGAGCTTAATAAAGGGAATGGCTCGAGGCTTGTTCTACCTTCACACA 1617
Query 121 CACGCAAATATCATCCACGGAAACCTGACATCAAGCAATGTACTTTTGGATGAGAACAAT 180
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||
Sbjct 1618 CACGCAAATATCATCCACGGAAACTTAACATCAAGCAATGTGCTTTTGGATGAGAAC-AT 1676
Query 181 AA-CGCGAAGATCTCAGATTACCGTCTTTCAAGGCTAATGACAGCAGCAGCAGGATCAAG 239
|| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 1677 AACCGCGAAGATCTCAGATTACGGTCTCTCAAGGCTAATGACAGCAGCAGCAGGATCCAG 1736
Query 240 CGTGATTGCAACAGCTGGTGCGTTAGGTTACACAGCACCTGAGCTCTCTAAGCTGAAGAA 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1737 CGTGATTGCAACAGCTGGTGCGTTAGGTTACAGAGCACCTGAGCTCTCTAAGCTGAAGAA 1796
Query 300 AGCCAATACGAAAACCGATGTGTACAGCCTCGGTGTGATCATATTGGAGCTTTTGACTGG 359
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1797 AGCCAACACGAAAACCGATGTGTACAGCCTCGGTGTGATCATATTGGAACTGTTGACTGG 1856
Query 360 TAAATCTCCGAGTGAGGCCTTAAACGGTGTGGATTTGCCTCAATGGGTTGCTACTGCAGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1857 GAAATCTCCGAGTGAGGCCTTAAACGGTGTGGATTTGCCTCAATGGGTTGCTACTGCGGT 1916
Query 420 TAAAGAAGAGTGGACTAATGAGGTTTTCGATTTGGAGCTGTTGAATGATGTGAACACAAT 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1917 TAAAGAAGAGTGGACTAATGAGGTTTTTGATTTGGAGCTGTTGAATGATGTGAACACAAT 1976
Query 480 GGTTGATGAGATTTTGAATACACTGAAACTGGCGTTGCATTGTGTTGATCCTACACCATC 539
|| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 1977 GGGTGATGAGATTTTGAATACACTGAAACTGGCTTTACATTGTGTTGATGCTACACCATC 2036
Query 540 AACAAGACCTGAAGCTCAACAAGTGATGACACAACTTGGAGAGATTAGACCTAAAGAGAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2037 AACAAGACCTGAAGCTCAACAAGTGATGACACAACTTGGAGAGATTAGACCGGAAGAGAC 2096
Query 600 A---GCAACAACGTCTGAACCATTGATTGATGTTCCTGAAGCTTCTGCTTCCACAAGTCA 656
| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2097 AACAGCAACAACATCAGAACCGTTGATTGATGTCCCTGAAGCTTCTGCTTCCACAAGTCA 2156
Query 657 ATAG 660
||||
Sbjct 2157 ATAG 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5