BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908083
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type RI... 2228 0.0
AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type RI... 2213 0.0
AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type RI... 2191 0.0
AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RI... 950 0.0
AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RI... 706 0.0
AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:... 399 4e-110
> AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type
RING finger) family protein | chr5:15837210-15840638 REVERSE
LENGTH=2187
Length=2187
Score = 2228 bits (1206), Expect = 0.0
Identities = 1586/1767 (90%), Gaps = 35/1767 (2%)
Strand=Plus/Plus
Query 1 ATGGCGCCTGAAGTTCAGTTTCCTTGCGACGGAGACGGCGTATGTATGCGGTG-CAAGGT 59
|||||| |||| |||| ||||||||||||| ||||| || ||||||||||| | ||||
Sbjct 136 ATGGCGATTGAAACTCAGCTTCCTTGCGACGGTGACGGTGTGTGTATGCGGTGTC-AGGT 194
Query 60 GAAACCTCCGTCAGAAGAGACACTCACGTGTGGCACGTGCGTCACTCCCTGGCACGTGTC 119
||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
Sbjct 195 GAATCCTCCGTCAGAAGAGACTCTCACTTGTGGCACGTGCGTCACTCCATGGCACGTG-C 253
Query 120 C-TGTCTCCTTCCTGAATCACTCTCTTCTTCCACTGGAGAGTGGCAGTGTCCCGATTGCT 178
| |||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 254 CGTGTCTCCTCCCCGAATCACTCGCTTCTTCCACTGGAGAGTGGGAGTGTCCCGATTGCT 313
Query 179 CCGGCGATGTCGTTTCCTCCGCCGTTCCAGTTACCAGAAACG-TCGGACTTGAATCATCC 237
|||||| ||||||| ||||||||| ||| | |||| |||||| || ||| |||||| |||
Sbjct 314 CCGGCGTTGTCGTTCCCTCCGCCGCTCCGGGTACCGGAAACGCTC-GACCTGAATCTTCC 372
Query 238 GGTTCAGTTCTCGTAGCAGCGATCCGTGCGATTCAGGCTGATCTGACTTTGACGGAAGCT 297
|||||||||||||| || |||||||||||||||||||||||| |||||| || ||||||
Sbjct 373 GGTTCAGTTCTCGTTGCTGCGATCCGTGCGATTCAGGCTGATGAGACTTTAACCGAAGCT 432
Query 298 GAGAAAGCCAAAAGGAGGCAGGAGCTCATGAGTGGTGGTGGTGACGATCGTCTCGATGAA 357
||||||||||||| |||||| | || |||||||| |||||||||||| || ||||||||
Sbjct 433 GAGAAAGCCAAAAAAAGGCAGAAACTGATGAGTGGGGGTGGTGACGATGGTGTCGATGAA 492
Query 358 GAAGACAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCT 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GAAGAGAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCT 552
Query 418 ATCACGACACCGTGTGGGCACAACTTCTGCTTGAGATGTTTCGAGAAATGGG---TAGGT 474
||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||
Sbjct 553 ATCACGACACCGTGTGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGT 612
Query 475 CAAGGGAAGCTAACTTGTATGACATGCCGAACCAAAATTCCCAAAAATGTTGCGCGAAAT 534
|||||||||||||||||||||| |||||||| ||||||||| | | |||| || ||||
Sbjct 613 CAAGGGAAGCTAACTTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCAAAAAAT 672
Query 535 CCTCGCATCAACTTAGCTCTAGTCTCTGCTATTCGTTTAGCAAGTGTTACCAAATGTTCT 594
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 673 CCTCGCATCAACTTAGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCT 732
Query 595 GTTGAGGCAGCTGCGGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAA 654
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GTTGAGGCAACTGCAGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAA 792
Query 655 GCCTTTACTACCGAGCGGGC--TAAAAAGACTGGGAAAGCTAATGCTGCTAGTGG-AAGG 711
|| ||||||||||||||||| |||||| |||||||||||||||||||||| || |||
Sbjct 793 GCATTTACTACCGAGCGGGCAGTAAAAA--CTGGGAAAGCTAATGCTGCTAGCGGTAAGT 850
Query 712 ATTTATGTCACAATACCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCACT 771
||| ||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 851 TTTT-TGTGACAATACCTCGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACT 909
Query 772 AGAAACCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGTGG 831
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 910 AGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGG 969
Query 832 GGAGCTCATTTCCCGCATATTGCTGGCATTGCTGGGCAATCAGCGGTTGGAGCTCAGTCT 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 970 GGAGCTCATTTCCCGCATATTGCTGGCATTGCCGGGCAATCAGCGGTTGGAGCTCAGTCT 1029
Query 892 GTGGCGCTCTCTGGAGGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTACACA 951
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1030 GTGGCCCTCTCTGGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACA 1089
Query 952 GGAAGTGGTGGAAGGGATCTCGGAGGAAACAAAAGAACTAACAAGATACAGTCTTCTGAC 1011
||||||||||||||||||||| | ||||||||||||| |||||||| |||||| ||||||
Sbjct 1090 GGAAGTGGTGGAAGGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGAC 1149
Query 1012 CAGTCGTTTGCAAAA-ATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGT 1070
||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1150 CAGGCGTTTA-AAAACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGT 1208
Query 1071 CCGAGTTGTCAGGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAG 1130
|||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 1209 CCGAGTTGTCAGGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAG 1268
Query 1131 ATACGATGGGGTCTACCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTCTTA 1190
||| ||||||||||| ||||| |||||||||||||| || |||||| ||||||||||||
Sbjct 1269 ATATGATGGGGTCTATCGAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTT 1328
Query 1191 TAAGGTCTGTCGTTACCTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGA 1250
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGA 1388
Query 1251 TGAGCATGGCGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTACTGA 1310
|||||||||||||||||||||||| ||||||||| |||| |||||| ||| ||| ||||
Sbjct 1389 TGAGCATGGCGATCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGA 1448
Query 1311 CCTGTTTGTGAGAAAGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAA 1370
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1449 CCTGTTTGTGAGAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAA 1508
Query 1371 ATGGATGAAGTCTCCACCTGTTAGCAGAAAGGCTGTTGCTGCTTTGGATCCTGAGGAGAG 1430
||||||||||||||| ||||||||||||| || ||| || |||||||||||||||
Sbjct 1509 ATGGATGAAGTCTCCTCCTGTTAGCAGAA----TG--GCT--TT-GGATCCTGAGGAGAG 1559
Query 1431 GAAGATCATTAGGAAAGCAAAAAACGGAAAT-AA--C-AGACTTCTGAAAGAATTCGGTT 1486
||||| | || || ||||||||| | | || | ||||||||||||||||| |||
Sbjct 1560 GAAGAAGAATAAGAGAGCAAAAAATACTA-TGAAGGCCAGACTTCTGAAAGAATTTAGTT 1618
Query 1487 GCCAAATCTGTAAGAAAGTGCTGAGTTTTCCAGTGACGACGCCTTGTGCTCACAACTTCT 1546
||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1619 GCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCT 1678
Query 1547 GCAAAGCATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCAGA- 1605
||||||||||| | ||||| || ||||||||| | ||||| ||||||||||||||| |
Sbjct 1679 GCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCA-AT 1737
Query 1606 GGCGGGCGCACACTACGTGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACCGAC 1665
||||| || | ||||||||||||||||||||| |||||||| || |||||||| || ||
Sbjct 1738 GGCGGACGTAAACTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCTGCACGACGGAT 1797
Query 1666 CTCTCCGACTTTCTTCAAAACCCGCAGGTGAATAGAGAAATGATGGAAGTTA-TCGAAAA 1724
|||||||| ||||| ||||||||||||||||| ||||| |||||||| | || | || ||
Sbjct 1798 CTCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGA-GATAATAGAGAA 1856
Query 1725 TCTGAAGAAGAAAGAGGAAGAGGCTGA 1751
| | ||||||| ||||||||||||||
Sbjct 1857 TTTTAAGAAGAGTGAGGAAGAGGCTGA 1883
> AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24583820-24586681 REVERSE
LENGTH=1869
Length=1869
Score = 2213 bits (1198), Expect = 0.0
Identities = 1581/1762 (90%), Gaps = 42/1762 (2%)
Strand=Plus/Plus
Query 15 TCAGTTTCCTTGCGACGGAGACGGCGTATGTATGCGGTGCAAGGTGAAACCTCCGTCAGA 74
|||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||
Sbjct 15 TCAGCTTCCTTGCGACGGAGACGGTGTATGTATGCGGTGCCAGGTGACACCTCCGTCAGA 74
Query 75 AGAGACACTCACGTGTGGCACGTGCGTCACTCCCTGGCACGTGTCCTGTCTCCTTCCTGA 134
|||||| |||||||||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 75 AGAGACTCTCACGTGTGGCACCTGTGTCACTCCATGGCACGTGTCGTGTCTCCTTCCTGA 134
Query 135 ATCACTCTCTTCTTCCACTGGAGAGTGGCAGTGTCCCGATTGCTCCGGCGATGTCGTTTC 194
||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||| |
Sbjct 135 ATCACTCGCTTCTTCCACTGGAGATTGGGAGTGTCCCGATTGCTCCGGCGTTGTCGTTCC 194
Query 195 CTCCGCCGTTCCAGTTACCAGAAACGT-CGGACTTGAATCATCCGGTTCAGTTCTCGTAG 253
|||||||| ||| | |||| ||| | | ||||| |||||| ||||||||||||||||| |
Sbjct 195 CTCCGCCGCTCCGGGTACCGGAATC-TCCGGACCTGAATCTTCCGGTTCAGTTCTCGTTG 253
Query 254 CAGCGATCCGTGCGATTCAGGCTGATCTGACTTTGACGGAAGCTGAGAAAGCCAAAAGGA 313
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 254 CTGCGATCCGTGCGATTCAGGCTGATGTGACTTTGACCGAAGCTGAGAAAGCCAAAAAGA 313
Query 314 GGCAGGAG-CTCATGAGTGGTGGTGGTGACGATCGTCTCGATGAAGAAGACAAGAAGAAG 372
|||| ||| || ||||||||||||||||||||| || ||||||| ||||| |||||||||
Sbjct 314 GGCA-GAGACTGATGAGTGGTGGTGGTGACGATGGTGTCGATGATGAAGAAAAGAAGAAG 372
Query 373 TTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGT 432
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 373 TTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAGAGACCTGTCACGACACCGTGT 432
Query 433 GGGCACAACTTCTGCTTGAGATGTTTCGAGAAAT-GG--GTAGGTCAAGGGAAGCTAACT 489
|||||||| ||||| |||| |||||||||||||| || |||||||||||||||||||||
Sbjct 433 GGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAAGCTAACT 492
Query 490 TGTATGACATGCCGAACCAAAATTCCCAAAAATGTTGCGCGAAATCCTCGCATCAACTTA 549
||||||| |||||||| ||||||||| | | |||| ||| |||||||||||||||||||
Sbjct 493 TGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCGAAAAATCCTCGCATCAACTTA 552
Query 550 GCTCTAGTCTCTGCTATTCGTTTAGCAAGTGTTACCAAATGTTCTGTTGAGGCAGCTGCG 609
|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 553 GCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCTGGTGAGGCAACTGCG 612
Query 610 GCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAAGCCTTTACTACCGAG 669
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 613 GCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAG 672
Query 670 CGGGCTA--AAAAGACTGGGAAAGCTAATGCTGCTAGTGG-AAGGATTTATGTCACAATA 726
||||| | |||| ||||||||||||||||||||||| || || | ||| ||| ||||||
Sbjct 673 CGGGC-AGTAAAA-ACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAATA 729
Query 727 CCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCACTAGAAACCAAGGTGTT 786
||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 730 CCTCGTGATCATTTTGGTCCCATACCAGCTGCGAATGATGTCACTAGAAACCAAGGTGTT 789
Query 787 TTGGTTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGTGGGGAGCTCATTTCCCG 846
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 790 TTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCCG 849
Query 847 CATATTGCTGGCATTGCTGGGCAATCAGCGGTTGGAGCTCAGTCTGTGGCGCTCTCTGGA 906
||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 850 CATGTTGCTGGCATTGCCGGGCAAGCAGCGGTTGGAGCTCAGTCTGTGGCCCTCTCTGGA 909
Query 907 GGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGG 966
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGG 969
Query 967 GATCTCGGAGGAAACAAAAGAACTAACAAGATACAGTCTTCTGACCAGTCGTTTGCAAAA 1026
|||||| | |||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 970 GATCTCAGTGGAAACAAAAGAGTTAACAAGATACAGTCTTCTGACCAGGCGTTT-AAAAA 1028
Query 1027 -ATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1029 CATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAGGTC 1088
Query 1086 TCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCTA 1145
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1089 TTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGGTCTA 1148
Query 1146 CCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTCT-TATAAGGTCTGTCGTT 1204
| |||| || ||||||||||| || ||||| ||||||||| | ||||| | |||||||
Sbjct 1149 CAGAATTGAAAAGTGCTGGAGTAATGTTGGCGTACAGGGTT-TGCATAAGATGTGTCGTT 1207
Query 1205 ACCTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATC 1264
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 ACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATC 1267
Query 1265 GTCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTACTGACCTGTTTGTGAGAA 1324
||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||
Sbjct 1268 GTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAATGCTACTGACCTGTTTGTGAGAA 1327
Query 1325 AGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTC 1384
|||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1328 AGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAGTGGATGAAGTCTC 1387
Query 1385 CACCTGTTAGCAGAAAGGCTGTTGCTGCTTTGGATCCTGAGGAGAGGAAGATCATTAGGA 1444
||||||||||||||| || ||| || |||| ||||||||||||||| | || ||
Sbjct 1388 CACCTGTTAGCAGAA----TG--GCT--TT-GGATACTGAGGAGAGGAAGAAGAATAAGA 1438
Query 1445 AAGCAAAAAACGGAAATAA--C-A-GA---C-----TTCTGAAAGAATTCGGTTGCCAAA 1492
||||||||| |||||||| | | || | |||||||||||||| |||||||||
Sbjct 1439 GAGCAAAAAAAGGAAATAATGCTATGAAGGCCAGACTTCTGAAAGAATTCAGTTGCCAAA 1498
Query 1493 TCTGTAAGAAAGTGCTGAGTTTTCCAGTGACGACGCCTTGTGCTCACAACTTCTGCAAAG 1552
||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1499 TCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTGCACACAACTTCTGCAAAG 1558
Query 1553 CATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCAGA-GGCGGG 1611
||||| | ||||| || ||||||||| | ||||| ||||||| ||||||| | |||| |
Sbjct 1559 CATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGACAGAAGCA-ATGGCGTG 1617
Query 1612 CGCACACTACGTGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACCGACCTCTCC 1671
|| | ||||||||||||||| ||||| |||||||| || |||||||| ||||| ||||||
Sbjct 1618 CGTAAACTACGTGCAAAGAAAAACATCATGACCTGCCCTTGCTGCACAACCGATCTCTCC 1677
Query 1672 GACTTTCTTCAAAACCCGCAGGTGAATAGAGAAATGATGGAAGTTA-TCGAAAATCTGAA 1730
|| ||||| ||||||||||||||||| |||||||||||||| | || | || ||| | ||
Sbjct 1678 GAGTTTCTCCAAAACCCGCAGGTGAACAGAGAAATGATGGA-GATAATAGAGAATTTTAA 1736
Query 1731 GAAGAAAGAGGAAGAGGCTGAA 1752
||||| |||||||||||||||
Sbjct 1737 GAAGAGTGAGGAAGAGGCTGAA 1758
> AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24589487-24592747 FORWARD
LENGTH=2050
Length=2050
Score = 2191 bits (1186), Expect = 0.0
Identities = 1578/1763 (90%), Gaps = 44/1763 (2%)
Strand=Plus/Plus
Query 15 TCAGTTTCCTTGCGACGGAGACGGCGTATGTATGCGGTGCAAGGTGAAACCTCCGTCAGA 74
|||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 62 TCAGCTTCCTTGCGACGGAGACGGTGTATGTATGCGGTGCCAGGTGAATCCTCCGTCAGA 121
Query 75 AGAGACACTCACGTGTGGCACGTGCGTCACTCCCTGGCACGTGTCCTGTCTCCTTCCTGA 134
|||||| |||||||||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 122 AGAGACTCTCACGTGTGGCACCTGTGTCACTCCATGGCACGTGTCGTGTCTCCTTCCTGA 181
Query 135 ATCACTCTCTTCTTCCACTGGAGAGTGGCAGTGTCCCGATTGCTCCGGCGATGTCGTTTC 194
||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||| |
Sbjct 182 ATCACTCGCTTCTTCCACTGGAGACTGGGAGTGTCCCGATTGCTCCGGCGTTGTTGTTCC 241
Query 195 CTCCGCCGTTCCAGTTACCAGAAACGT-CGGACTTGAATCATCCGGTTCAGTTCTCG-TA 252
|||||||| ||| | |||| ||| | | ||||| |||||| |||||||||||||||| ||
Sbjct 242 CTCCGCCGCTCCGGGTACCGGAATC-TCCGGACCTGAATCTTCCGGTTCAGTTCTCGTTA 300
Query 253 GCAGCGATCCGTGCGATTCAGGCTGATCTGACTTTGACGGAAGCTGAGAAAGCCAAAAGG 312
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 301 -CTGCGATCCGTGCGATTCAGGCTGATGTGACTTTGACCGAAGCTGAGAAAGCCAAAAAG 359
Query 313 AGGCAGGAG-CTCATGAGTGGTGGTGGTGACGATCGTCTCGATGAAGAAGACAAGAAGAA 371
||||| ||| || ||||||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 360 AGGCA-GAGACTGATGAGTGGTGGTGGTGACGATGGTGTCGATGATGAAGAAAAGAAGAA 418
Query 372 GTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCTATCACGACACCGTG 431
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 419 GTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAGAGACCTGTTACGACACCGTG 478
Query 432 TGGGCACAACTTCTGCTTGAGATGTTTCGAGAAAT-GG--GTAGGTCAAGGGAAGCTAAC 488
||||||||| ||||| |||| |||||||||||||| || ||||||||||||||||||||
Sbjct 479 TGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAAGCTAAC 538
Query 489 TTGTATGACATGCCGAACCAAAATTCCCAAAAATGTTGCGCGAAATCCTCGCATCAACTT 548
|||||||| |||||||| ||||||||| | | |||| ||| ||||||||||||||||||
Sbjct 539 TTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCGAAAAATCCTCGCATCAACTT 598
Query 549 AGCTCTAGTCTCTGCTATTCGTTTAGCAAGTGTTACCAAATGTTCTGTTGAGGCAGCTGC 608
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 599 AGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCTGGTGAGGCAACTGC 658
Query 609 GGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAAGCCTTTACTACCGA 668
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 659 GGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGA 718
Query 669 GCGGGCTA--AAAAGACTGGGAAAGCTAATGCTGCTAGTGG-AAGGATTTATGTCACAAT 725
|||||| | |||| ||||||||||||||||||||||| || || | ||| ||| |||||
Sbjct 719 GCGGGC-AGTAAAA-ACTGGGAAAGCTAATGCTGCTAGCGGTAA-GTTTTTTGTGACAAT 775
Query 726 ACCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCACTAGAAACCAAGGTGT 785
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 776 ACCTCGTGATCATTTTGGTCCCATACCAGCTGCGAATGATGTCACTAGAAACCAAGGTGT 835
Query 786 TTTGGTTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGTGGGGAGCTCATTTCCC 845
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 836 TTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCC 895
Query 846 GCATATTGCTGGCATTGCTGGGCAATCAGCGGTTGGAGCTCAGTCTGTGGCGCTCTCTGG 905
|||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 896 GCATGTTGCTGGCATTGCCGGGCAAGCAGCGGTTGGAGCTCAGTCTGTGGCCCTCTCTGG 955
Query 906 AGGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAG 965
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAG 1015
Query 966 GGATCTCGGAGGAAACAAAAGAACTAACAAGATACAGTCTTCTGACCAGTCGTTTGCAAA 1025
||||||| | |||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 1016 GGATCTCAGTGGAAACAAAAGAGTTAACAAGATACAGTCTTCTGACCAGGCGTTT-AAAA 1074
Query 1026 A-ATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGT 1084
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1075 ACATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAGGT 1134
Query 1085 CTCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCT 1144
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1135 CTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGGTCT 1194
Query 1145 ACCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTCT-TATAAGGTCTGTCGT 1203
|| |||| || ||||||||||| || ||||| ||||||||| | ||||| | ||||||
Sbjct 1195 ACAGAATTGAAAAGTGCTGGAGTAATGTTGGCGTACAGGGTT-TGCATAAGATGTGTCGT 1253
Query 1204 TACCTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGAT 1263
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGAT 1313
Query 1264 CGTCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTACTGACCTGTTTGTGAGA 1323
|||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||
Sbjct 1314 CGTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAATGCTACTGACCTGTTTGTGAGA 1373
Query 1324 AAGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCT 1383
||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1374 AAGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAGTGGATGAAGTCT 1433
Query 1384 CCACCTGTTAGCAGAAAGGCTGTTGCTGCTTTGGATCCTGAGGAGAGGAAGATCATTAGG 1443
|||||||||||||||| || ||| || |||| ||||||||||||||| | || |
Sbjct 1434 CCACCTGTTAGCAGAA----TG--GCT--TT-GGATACTGAGGAGAGGAAGAAGAATAAG 1484
Query 1444 AAAGCAAAAAACGGAAATAA--C-A-GA---C-----TTCTGAAAGAATTCGGTTGCCAA 1491
| ||||||||| |||||||| | | || | |||||||||||||| ||||||||
Sbjct 1485 AGAGCAAAAAAAGGAAATAATGCTATGAAGGCCAGACTTCTGAAAGAATTCAGTTGCCAA 1544
Query 1492 ATCTGTAAGAAAGTGCTGAGTTTTCCAGTGACGACGCCTTGTGCTCACAACTTCTGCAAA 1551
|||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1545 ATCTGTCGGAAAGTGCTGAGTCTTCCAGTGACGACACCTTGTGCACACAACTTCTGCAAA 1604
Query 1552 GCATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCAGA-GGCGG 1610
|||||| | ||||| || ||||||||| | ||||| ||||||| ||||||| | ||||
Sbjct 1605 GCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGACAGAAGCA-ATGGCGT 1663
Query 1611 GCGCACACTACGTGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACCGACCTCTC 1670
||| | ||||||||||||||| ||||| |||||||| || |||||||| ||||| |||||
Sbjct 1664 GCGTAAACTACGTGCAAAGAAAAACATCATGACCTGCCCTTGCTGCACAACCGATCTCTC 1723
Query 1671 CGACTTTCTTCAAAACCCGCAGGTGAATAGAGAAATGATGGAAGTTA-TCGAAAATCTGA 1729
||| ||||| ||||||||||||||||| ||||| |||||||| | || | || ||| | |
Sbjct 1724 CGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGA-GATAATAGAGAATTTTA 1782
Query 1730 AGAAGAAAGAGGAAGAGGCTGAA 1752
|||||| |||||||||||||||
Sbjct 1783 AGAAGAGTGAGGAAGAGGCTGAA 1805
> AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:21414170-21417946 REVERSE
LENGTH=2154
Length=2154
Score = 950 bits (514), Expect = 0.0
Identities = 1091/1362 (80%), Gaps = 69/1362 (5%)
Strand=Plus/Plus
Query 385 TGTTCTATT-TGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAACTT 443
|||||| || || || || ||||| || |||||| | |||| ||| ||||||||||||
Sbjct 480 TGTTCT-TTCTGTATGCAGTTGCCTGAGAGACCTGTGACGAAACCATGTGGGCACAAC-G 537
Query 444 C-TGCTTGAGATGTTTCGAGAAATGGGTAGGTCAAGGG-AAGCTAACTTGTATG-ACATG 500
| ||||| | |||||| ||||||||| | || | |||| ||| ||||||| | | |||
Sbjct 538 CTTGCTTAAAATGTTTTGAGAAATGGATGGGGC-AGGGAAAGAGAACTTGT-GGTAAATG 595
Query 501 CCGAACCAAAATTCC--CAAAAATGTTGCGCGA-AATCCTCGCATCAACTTAG-CTCTAG 556
||| | || |||||| ||||||| || | ||||| || |||||| | | |||| |
Sbjct 596 CCGCAGCATAATTCCTGAAAAAATG--GC-TAAGAATCCCCGTATCAAC-TCGTCTCTTG 651
Query 557 TCT-CTGCTATTCGTTTAGCAAGTGT-TACCAAATGTTCTGTTGAGGCAGCTGCGGCCAA 614
| | |||| ||||| ||||||| || | | ||| || ||| || | | | | | ||
Sbjct 652 T-TGCTGCCATTCGATTAGCAAAAGTCT-CTAAAAGTGCTGCTG-CG-A-CCACTTCAAA 706
Query 615 GGTTC-ATCATATT-ATCCGCAACCAAGACCGTCCTGAGAAAGCCTTTACTACCGAGCGG 672
|| || |||| || ||| ||||||||||||| || || ||||| ||||| ||||||||
Sbjct 707 GG-TCTTTCAT-TTCATCAGCAACCAAGACCGACCAGATAAAGCATTTACAACCGAGCGT 764
Query 673 GCTAAA-AAGACTGGGAAAGCTAATGCTGCTAGTGGAAGGATTTATGTCACAATACCTGG 731
|| ||| || ||||| || || || ||||||||||||| ||||||||| ||||||||
Sbjct 765 GC-AAAGAAAACTGGCAAGGCAAACGCTGCTAGTGGAAAGATTTATGTTACAATACCACC 823
Query 732 TGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCACT-AGAAACCAAGGTGTTTTGG 790
|||||||||||||| || |||||||||||||| ||| | || ||||||||| ||||||
Sbjct 824 AGATCATTTTGGTCCTATTCCAGCTGAAAATGA-CCCTGTCAGGAACCAAGGTCTTTTGG 882
Query 791 TTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGTGGGGAGCTCATTTCCCGCATA 850
|||||||||| ||||||||||| | || |||||||||||||| ||||||||||| |||
Sbjct 883 TTGGAGAATCCTGGGAGGACAGACTCGAGTGTAGGCAGTGGGGTGCTCATTTCCCACATG 942
Query 851 TTGCTGGCATTGCTGGGCAATC-AGCGGT-TGGAGCTCAGTCTGTGGCGCTCTCTGGAGG 908
|||||||||||||||| ||||| | | | ||| ||||| ||||| || |||||||||||
Sbjct 943 TTGCTGGCATTGCTGGACAATCTA-C-TTATGGCGCTCAATCTGTAGCACTCTCTGGAGG 1000
Query 909 TTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGA 968
|||| | ||||||||||||||||| ||||||||||| |||||||||||||| || || ||
Sbjct 1001 TTATAAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGTAGAGA 1060
Query 969 TCTCGGAGGAAACAAAAGAACTAACAA-GATACAGTCTTCTGACCAGTCGTTTGCAAAAA 1027
|||| | || |||||||| |||||||| || ||||||| |||||| ||||| | ||
Sbjct 1061 TCTCAGTGGCAACAAAAGGACTAACAAGGA-GCAGTCTTTTGACCAAAAGTTTG-AGAAG 1118
Query 1028 T-GAATGAAGC-TCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTC 1085
| |||| ||| | ||| ||| || |||||| |||| |||||||| ||||||||||||||
Sbjct 1119 TCTAATGCAGCAT-TAAAACTCAGCTGCAAATTGGGGTATCCTGTTCGAGTTGTCAGGTC 1177
Query 1086 TCACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCTA 1145
|||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||
Sbjct 1178 TCACAAGGAGAAGCGTTCTGCATACGCCCCTGAGGAAGGAGTGAGATATGATGGGGTTTA 1237
Query 1146 CCGAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTCTTATAAGGTCTGTCGTTA 1205
| | || |||||||||||| |||| |||||| |||||||||||| |||||||||||||||
Sbjct 1238 CAGGATTGAGAAGTGCTGGCGCAAAGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGTTA 1297
Query 1206 CCTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCG 1265
||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1298 CCTGTTCGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGAATGGAGATCG 1357
Query 1266 TCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAAGCTACTGACCTGTTTGTGAGAAA 1325
|||||||||| | |||||||||||||||||||| | || || |||||||||| ||||||
Sbjct 1358 TCCAAGACCTATCCCTAATATTCCAGAGCTTAATATGGCCACCGACCTGTTTGAGAGAAA 1417
Query 1326 GGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTCC 1385
|| | ||| ||||||||||| ||||||| ||||||| ||||||||||||||||| | ||
Sbjct 1418 AGAAACTCCATCATGGGATTTTGATGAAGGTGAGGGTTGTTGGAAATGGATGAAGCCGCC 1477
Query 1386 ACCTGTTAGCAGAAAGGCTGTTGC-TGCTTTGGATCCTGAGGAGAGGAAGATCATT--AG 1442
||||| || | |||| | || | || ||||| ||||||||||||||| | ||| ||
Sbjct 1478 ACCTGCAAGTAAAAAGTCAGT-GAATGTTTTGGCTCCTGAGGAGAGGAAAA--ATTTGAG 1534
Query 1443 GAAAGCAAAAAA--CGG-A-A----A-TA--A------CA-GACTTCTGAAAGAATTCG- 1483
|||||| | ||| ||| | | | || | || ||||||||||||||||
Sbjct 1535 GAAAGCCATAAAGGCGGCACACTCGAATACCATGAGGGCAAGACTTCTGAAAGAATTTAA 1594
Query 1484 GTTGCCAAATCTGTAAGAAAGTGCTGAGTTTTCCAGTGACGACGCCTTGTGCTCACAACT 1543
|| |||| |||||| || ||||| ||| | |||| ||||| || || |||||||| ||||
Sbjct 1595 GT-GCCAGATCTGTCAGCAAGTGTTGACTCTTCCTGTGACAACACCCTGTGCTCATAACT 1653
Query 1544 TCTGCAAAGCATGCCTGGAAGCTAAATTTGCTGGGGTCTCTCAAGTGAGAGAGAGAAGCA 1603
||||||| || ||| | ||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1654 TCTGCAAGGCTTGCTTAGAAGCGAAATTTGCTGGGAAAACTCTTGTGAGAGAGAGAAGCA 1713
Query 1604 GAGGCGGGCGCACACTACG-TGCAAAGAAGAACATAATGACCTGTCCGTGCTGCACTACC 1662
||| || || |||||||| | ||| |||||| | ||| ||| || || ||| | ||
Sbjct 1714 CAGGTGGACGGACACTACGCT-CAAGGAAGAATGTCCTGAACTGCCCTTGTTGCCCAACA 1772
Query 1663 GACCTCTCCGACTTTCTTCAAAACCCGCAGGTGAATAGAGAA 1704
||| | || || ||||| || ||||| ||||| || ||||||
Sbjct 1773 GACATATCTGATTTTCTGCAGAACCCTCAGGTCAACAGAGAA 1814
> AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type
RING finger) family protein | chr1:21408623-21412283 REVERSE
LENGTH=2107
Length=2107
Score = 706 bits (382), Expect = 0.0
Identities = 1063/1378 (77%), Gaps = 102/1378 (7%)
Strand=Plus/Plus
Query 424 ACACCGTGTGGGCACAACTTC-TGCTTGAGATGTTTCGAGAAATGGGTAGGTCAAGGGA- 481
||||| |||||||||||| | ||||||| ||||||| ||| ||| | || | |||||
Sbjct 511 ACACCATGTGGGCACAAC-GCTTGCTTGAAATGTTTCTTGAAGTGGATGGGGC-AGGGAC 568
Query 482 AGCTAACTTGTATG-ACATGCCGAACCAAAATTCC-CAAA-AAT-GTTGCGCGAAATCCT 537
| | | |||| | |||||||| | | |||||| ||| || ||| | | |||||
Sbjct 569 ACCGCAGTTGT-GGAACATGCCGCAGCGTAATTCCTGAAAGCATGGTTAC-C--AATCCC 624
Query 538 CGCATCAACTTAGCT-C-TAGTCTCTGCTATTCGTTTAGCAAGTGTTA-CC-AAATGTTC 593
|| |||||||| | | | | || ||||||||| | |||||||| | || || ||| | |
Sbjct 625 CGTATCAACTT-G-TCCATTGTGTCTGCTATTAGGTTAGCAAGAG-TATCCGAAAAG-GC 680
Query 594 TGTTGAGGCAGCTGCGGCCAAGGTTCATCA-TATTATCCG-CAACCAAGACCGTCCTGAG 651
|| || || | | | | || ||| ||| || | | | ||| |||| ||||| ||
Sbjct 681 TGATG-CGC-G-TACTTCAAAAGTTGTTCACTA-TGT-TGACAATGAAGATCGTCCAGAT 735
Query 652 AAAGCCTTTACTACCGAGCGGGCTAA-AAAGACTGGGAAAGCTAATGCTGCTAGTGG-AA 709
||||| ||||| || ||||| ||||| ||| || ||||| || |||||| | ||||| ||
Sbjct 736 AAAGCATTTACAACTGAGCGCGCTAAGAAA-ACAGGGAATGCAAATGCTTCCAGTGGCAA 794
Query 710 GGATTTATGTCACAATACCTGGTGATCATTTTGGTCCCATACCAGCTGAAAATGATCCCA 769
||||| ||| ||||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct 795 -GATTTTTGTTACAATCCCTCGAGATCATTTTGGTCCTATACCAGCTGAAAATGATCCTG 853
Query 770 CTAGAAACCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGATTGTAGGCAGT 829
||| ||||||||| |||||||||||||||| ||| ||| | | | | |||| ||||||
Sbjct 854 TTAGGAACCAAGGTCTTTTGGTTGGAGAATCCTGGAAGGGCCGACTTGCTTGTCGGCAGT 913
Query 830 GGGGAGCTCATTTCCCGCATATTGCTGGCATTGCTGGGCAATCAGCGGT-TGGAGCTCAG 888
|||| ||||| ||||| ||| || | ||||||||||| ||| | | | | |||||||||
Sbjct 914 GGGGGGCTCACTTCCCACATGTTTCCGGCATTGCTGGACAAGC-GAGTTATGGAGCTCAA 972
Query 889 TCTGTGGCGCTCTCTGGAGGTTATGATGATGATGAGGATCATGGTGAATGGTTTCTCTAC 948
||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 973 TCTGTTGTGCTCGCTGGAGGTTATGATGATGATGAGGATCATGGAGAATGGTTTCTATAC 1032
Query 949 ACAGGAAGTGGTGGAAGGGAT-CTCGGAGGAAACAAAAGAACTAACAAGATACA-GTCTT 1006
||||||||||| ||||| || ||| ||| |||||||| ||||||| | | || | |||
Sbjct 1033 ACAGGAAGTGGGGGAAGA-ATTCTCAAAGGCAACAAAAGGACTAACACGGTTCAAG-CTT 1090
Query 1007 CTGACCA-GTCGTTTGCAAAAATG-AATGAAGCTCTAAGACTTAGTTGCAAAAT-GGGCT 1063
||| || || ||| | ||| | ||||||||| ||||||||||||| ||| | ||| |
Sbjct 1091 TTGATCAAGTA-TTT-CTAAACTTTAATGAAGCTTTAAGACTTAGTTGTAAACTAGGG-T 1147
Query 1064 ATCCTGTCCGAGTTGTCAGGTCTCAC-AAGGAGAAGCGTTCTGCATATGCCCCT-AAGGA 1121
||||||| ||||||||||||||| || ||||| ||||||||| |||| |||||| |||||
Sbjct 1148 ATCCTGTTCGAGTTGTCAGGTCT-ACCAAGGACAAGCGTTCTCCATACGCCCCTCAAGGA 1206
Query 1122 AGGAGTG--A-GATACGATGGGGTCTACCGAATCGAGAAGTGCTGGAGCA-ACGTTGGAA 1177
||| | | | || ||||| || ||||| || ||||| |||||||| | | |||||||
Sbjct 1207 -GGACTACTAAGGTATGATGGTGTTTACCGGATAGAGAAATGCTGGAGGATA-GTTGGAA 1264
Query 1178 TACAGGGTTCTTATAAGGTCTGTCGTTACCTATTTGTTAGATGTGACAATGAGCCAGCTC 1237
||||| || | | | |||| ||| ||||||||||||||||||||||||||||
Sbjct 1265 TACAG-------AT--G-T--GCCGTTTCCTGTTTGTTAGATGTGACAATGAGCCAGCTC 1312
Query 1238 CATGGACCAGTGATGAGCATGGCGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTA 1297
|||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||
Sbjct 1313 CATGGACCAGTGATGAGCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCTGAGCTTA 1372
Query 1298 AGAAAGCTACTGACCTGTTTGTGAGAAAGGATAGTCCGTCATGGGATTTCGATGAAGCTG 1357
| | || || |||||||||| |||||| || ||||| ||||||||||| ||||||| ||
Sbjct 1373 ATATGGCCACAGACCTGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTG 1432
Query 1358 AGGGTCGTTGGAAATGGATGAAGTCTCCACCTGTTAGCAGAAAGGCTGTTGC---TGCTT 1414
||| |||||||| |||||||||| | ||||||| ||| | |||||| ||| || ||
Sbjct 1433 AGGATCGTTGGAGATGGATGAAGCCACCACCTGCTAGTAAAAAGGCAGTTAAAAATGTTT 1492
Query 1415 TGGATCCTGAGGAGAGGAAGATCATT--AGGAAAGCAAAAAA--CGG-AAA------TA- 1462
||||||||||||||||||| | | || ||| |||| | ||| ||| ||| ||
Sbjct 1493 TGGATCCTGAGGAGAGGAA-A-CTTTTGAGGGAAGCCATAAAGTCGGCAAACCCGAATAC 1550
Query 1463 -A------CA-GACTTCTGAAAGAATTCG-GTTGCCAAATCTGTAAGAAAGTGCTGAGTT 1513
| || ||||| |||||||||| || |||| |||||| |||||||| ||| |
Sbjct 1551 CATGAGGGCAAGACTTTTGAAAGAATTTAAGT-GCCAGATCTGTCAGAAAGTGATGACTA 1609
Query 1514 TTCCAGTGACGACGCCTTGTGCTCACAACTTCTGCAAAGCATGCCTGGAAGCTAAATTTG 1573
||| ||||| |||||||||||||| ||||||||||| || || ||||| | || ||||
Sbjct 1610 ATCCTGTGACAACGCCTTGTGCTCATAACTTCTGCAAGGCTTGTTTGGAATCGAAGTTTG 1669
Query 1574 CTGGGGTCT-CTCAAGTGAGAGAGAGAAGCAGAGGCGGGCGCACACTACGTGCA-AAGAA 1631
||||| | ||| ||||||||||||| |||| || || || | | ||||| || || ||
Sbjct 1670 CTGGGA-CAGCTCTAGTGAGAGAGAGAGGCAGCGGTGGACGAAAATTACGTTCACAA-AA 1727
Query 1632 GAACATAATGACCTGTCCGTGCTGCACTACCGACCTCT-CCGACTTTCTTCAAAACCCGC 1690
|| | |||| || || || ||| | || ||| | | |||| ||| | || ||||| |
Sbjct 1728 GAGTGTCATGAAGTGCCCTTGTTGCCCAACGGACAT-TGCCGAGTTTGTCCAGAACCCTC 1786
Query 1691 AGGTGAATAGAGAAAT-GATGGAAGTTATCGAAAATCTGAAGAAGAAAGAGGAAGAGG 1747
|||| ||||||||| | | ||| || || || || |||||||| | || | ||||||
Sbjct 1787 AGGTCAATAGAGAAGTAGC-GGAGGTGATAGAGAAGCTGAAGAA-ACAG-G-AAGAGG 1840
> AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:5463885-5466671
REVERSE LENGTH=1634
Length=1634
Score = 399 bits (216), Expect = 4e-110
Identities = 319/368 (87%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 1028 TGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTC 1087
||||||||||| ||||| |||||||| ||||||| ||||| || |||||||||||||||
Sbjct 968 TGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAGGTCTT 1027
Query 1088 ACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCTACC 1147
||||||| | | ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1028 ACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGGTGTATACA 1087
Query 1148 GAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTC-TTATAAGGTCTGTCGTTAC 1206
| |||||||| |||||| | || | | || | | || ||| || ||||||||||||||||
Sbjct 1088 GGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATT-TAAGGTCTGTCGTTAC 1146
Query 1207 CTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCA-TGGCGATCG 1265
|| ||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||
Sbjct 1147 CTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAG-AGTGGAGATCG 1205
Query 1266 TCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAA-G-C-TACTGACCTGTTTGTGAG 1322
||||||||||||||||||||||||||||||| |||| | | | | |||||||||| |||
Sbjct 1206 TCCAAGACCTTTGCCTAATATTCCAGAGCTT--GAAACGGCCT-CAGACCTGTTTGAGAG 1262
Query 1323 AAAGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTC 1382
|||||| ||||| ||||||||||| |||||||| ||||| ||||||| |||||||||| |
Sbjct 1263 AAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGGATGAAGCC 1322
Query 1383 TCCACCTG 1390
||||||||
Sbjct 1323 TCCACCTG 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91917197895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5