BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908088
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 881 0.0
AT1G63740.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 281 8e-75
AT1G63750.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 237 2e-61
> AT1G66090.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr1:24602146-24604763 FORWARD LENGTH=1555
Length=1555
Score = 881 bits (477), Expect = 0.0
Identities = 599/658 (91%), Gaps = 7/658 (1%)
Strand=Plus/Plus
Query 337 AAGGATTTTGATGACATAGTGGGACTTAAAGCTCATTTGACGGAAATTGAGTCTTTGCTA 396
|||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 655 AAGGATTTTGATGAAATGGTGGGAATTAAAGCTCATTTGACGAAAATTGAGTCTTTGCTA 714
Query 397 TATCTAGACTATGATAAAGTTAAGATGGTTGGAATCTCTGGTCCGGCAGGCATTGGTAAG 456
| | |||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 715 TCTTTAGATTATGATAAAGTTAAGATCGTTGGGATCTCCGGTCCTGCAGGCATTGGTAAG 774
Query 457 AGTACCATTGCTAGAGCCTTACATAGCCTACTCTCAAGCAGTTTTCATCATAGTTGTTAT 516
||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||| |
Sbjct 775 AGTACCATTGCCAGAGCCTTACATAACCTACTCTCTAGCAGTTTTCATCTTAGTTGTTTT 834
Query 517 ATGGAAAACCTTA-TAG--AAAGCAAAGCCAATAGTGCTCTAGAGTATCGTTCGAAATTG 573
||||||||||||| ||| ||||||| || ||||| ||||||||||| |||||||||||
Sbjct 835 ATGGAAAACCTTATTAGCCAAAGCAACCCCCATAGTTCTCTAGAGTATAGTTCGAAATTG 894
Query 574 AGTTTACAAGAGCAGCTTCTTTCGCAAGTTTTGAACCTAAAGGACATTAGGATACGCCAT 633
|||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 895 AGTTTACAAGAGCAACTTCTCTCACAAGTTTTGAACGAAAAGGACATTAGGATACGCCAT 954
Query 634 TTAGGTGCGATACGCGAAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACGTG 693
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTAGGTGCGATACAAGAAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACGTG 1014
Query 694 AAGGAGGC-AGAGCAACTAGAGGTTTTGGCTAATATCAAGTGGTTTGGTCCTGGAAGTAG 752
| | || | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 ACG-AGTCTAGAGCAACTAGAGGTTTTGGCTAATATCAAGTGGTATGGTCCTGGAAGTAG 1073
Query 753 AATCATAGTGATCACTGAAAACAAAGATATTTTGGTGCAACATGGTATATGTGATATATA 812
|||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1074 GATCATAGTAATCACTAAAAAGAAAGATATTTTGGTGCAACATGGTATCTGTGATATATA 1133
Query 813 CCATGTGGGTTTTCCATCACAAGAAGATGCTCTAAAGATCTTTTGTCTATATGCTTTTAG 872
|||||||||||||||| || | | |||||||||||||||||||||||||| ||||| |||
Sbjct 1134 CCATGTGGGTTTTCCAACAGATGCAGATGCTCTAAAGATCTTTTGTCTATCTGCTTATAG 1193
Query 873 ACAAACCTCTCCACCTTATGGATATATGAAACTTCATGAATGTGAAATGGTTGTAAAATA 932
|||||||||||||||| |||||| ||||||| ||||||| ||||||||| || ||||| |
Sbjct 1194 ACAAACCTCTCCACCTGATGGATCTATGAAAATTCATGAGTGTGAAATGTTTATAAAA-A 1252
Query 933 TT-GTGGCAGTCTTCCATTGAATCTACATGTTTTGGGGACGGCGTTTCGGGGAAGGAG 989
|| |||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1253 TTTGTGGCAATCTTCCATTGCATCTACATGTTTTGGGGTCGGCGCTTCGGGGAAGGAG 1310
Score = 438 bits (237), Expect = 5e-122
Identities = 307/341 (90%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAATGATGAAAGGATCGAGAGAAGCCAAACCATCGCCCCTGCTCTCACACAGGCG 60
||||| ||||| ||||||| ||||||||||||||| | |||||| ||||||| ||||||
Sbjct 241 ATGTTTGATGATCAAAGGATGGAGAGAAGCCAAACCCTTGCCCCTACTCTCACGCAGGCG 300
Query 61 ATTAGAGAATCGAGGATATCCATCGTCGTGCTCTCGAAGAACTATGCTTCATCAAGCTGG 120
||||||||||||| ||| | ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 301 ATTAGAGAATCGAAGATCTACATCGTCTTGCTCTCGAAGAACTATGCTTCATCGAGCTGG 360
Query 121 TGTCTTGATGAGCTATTGGAGATTTTGAACTGCAAAGAAAAC-GCAGGACAGATAGTGAT 179
|||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||
Sbjct 361 TGTCTTGATGAGCTATTGGAGATTTTAAACTGCAAAGAAAAAAG-AGGACAGAGAGTGAT 419
Query 180 GACAATCTTCCACGGAGTAAATCCATCTGATGTGCGCAAACAAACCGGAGAATTTGGGAT 239
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 420 GACAATCTTCTACGGCGTAAATCCATCTGATGTGCGGAAACAAACCGGAGAATTTGGAAT 479
Query 240 CGCTTTCAAAGAAACTTGTGCTCGTAAAACAAAGGAGGAGATGATAAAATGGACCCATGC 299
||||||||| ||||||||||||||||||||| ||||||||| || |||||||| ||| ||
Sbjct 480 CGCTTTCAACGAAACTTGTGCTCGTAAAACAGAGGAGGAGAGGAGAAAATGGAGCCACGC 539
Query 300 TTTGAACTTTGTGGGCAACATAGCTGGAGTACAC-TCGAAG 339
||||| || ||||||||||||| | ||||||||| || |||
Sbjct 540 TTTGACCTGTGTGGGCAACATAACCGGAGTACACGTCCAAG 580
> AT1G63740.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23645429-23648973 FORWARD LENGTH=3241
Length=3241
Score = 281 bits (152), Expect = 8e-75
Identities = 278/338 (82%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 1 ATGTTCAATGATGAAAG-GATCGAGAGAAGCCAAACCATCGCCCCTGCTCTCACAC-AGG 58
|||||| ||||| ||| ||||| ||| |||||||||| |||||| ||||||| |||
Sbjct 97 ATGTTCGATGAT-CAAGCAATCGAAAGAGGCCAAACCATTTCCCCTGAACTCACACGAGG 155
Query 59 CGATTAGAGAATCGAGGATATCCATCGTCGTGCTCTCGAAGAACTATGCTTCATCAAGCT 118
|||||| ||||||||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct 156 -GATTAGGGAATCGAGGATCTCGATCGTAGTGCTCTCGAAGAACTATGCTTCATCGAGCT 214
Query 119 GGTGTCTT-GATGAGCTATTGGAGATTTTGAACTGCAAAGAAAACGCAGGACAGATAGTG 177
||||| || |||||||| |||||||||||||| ||||| ||| | || || ||||||
Sbjct 215 GGTGT-TTGGATGAGCTGTTGGAGATTTTGAAATGCAAGGAAGATATTGGGCAAATAGTG 273
Query 178 ATGACAATCTTCCACGGAGTAAATCCATCTGATGTGCGCAAACAAACCGGAGA-AT-TTG 235
||||| ||||| |||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 274 ATGACTGTCTTCTACGGAGTAGATCCATCTGATGTGCGCAAACAAACCGGAGATATCTTG 333
Query 236 GGATCGCTTTCAAAGAAA-CTTGTGCTCGTAAAACAAAGGAGGAGATGATAAAATGGACC 294
| | |||||| |||| ||||| || ||||||| ||||| ||| | || ||||| |
Sbjct 334 AAA--GTTTTCAA-GAAAACTTGTTCTGGTAAAACGGAGGAGAAGAGGCGAAGATGGAGC 390
Query 295 CATGCTTTGAACTTTGTGGGCAACATAGCTGGAGTACA 332
|| ||||||||| ||| |||||||| || |||| |||
Sbjct 391 CAAGCTTTGAACGATGTTGGCAACATTGCCGGAGAACA 428
> AT1G63750.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23650848-23655359 FORWARD LENGTH=3514
Length=3514
Score = 237 bits (128), Expect = 2e-61
Identities = 441/584 (76%), Gaps = 53/584 (9%)
Strand=Plus/Plus
Query 337 AAGGATTTTGATGACATAG-TGGGACTTA-AAGCTCATTTGACGGAAATTGAGTCTTTGC 394
||||||||||| || || | |||||| || ||||||| |||| | |||| ||||||||
Sbjct 648 AAGGATTTTGAAGATAT-GATGGGAC-TAGAAGCTCACTTGAAGAAAATCCAGTCTTTGT 705
Query 395 TATATCTAGACTAT---GATAAAGTTAAGATGGTTGGAATCTCTGGTCCGGCAGGCATTG 451
|| | |||| ||| ||| ||| | ||| |||||||||||||||| || |||||||
Sbjct 706 TACGTTTAGATTATAAGGATGAAGCTCTGATAATTGGAATCTCTGGTCCTGCGGGCATTG 765
Query 452 GTAAGAGTACCATTGCTAGAGCCTTACATAGCCTACTCTCA-AGCAGTTTTCATCATAGT 510
|||||||||||||||||||||| || | |||| |||||| | || ||||| | ||
Sbjct 766 GTAAGAGTACCATTGCTAGAGCTTTGGAGAGCCGACTCTCTGAT-AGGTTTCAACTTACA 824
Query 511 TGTTATATGGAAAACCTTATAGAAAGCAAAGCCAATAGTGCTCT--A-GAGTATCGTTC- 566
|||| |||||| | ||| || |||| | | |||| || ||| | || || || ||
Sbjct 825 TGTTTTATGGAT--C-TTAGAGGAAGCGA-G--AATAATGGTCTTCACGATTA-CGGTCA 877
Query 567 GAAATTGAGTTTACAAGAGCAGCTTCTTTCGCAA-G-TTTTGAACCTAA-A-GG-ACATT 621
| | ||| |||||||||| || |||||| |||| | ||||||| | || | || ||
Sbjct 878 GCAGTTGCGTTTACAAGAACAACTTCTT--GCAAAGGTTTTGAATC-AAGATGGTACG-- 932
Query 622 AGGATACGCCATTTAGGTGCGATACG-CGAAAGGCTACA-CGACCAGAGGGTTCTTATCA 679
|||||| |||||||||| | | ||| | |||||||| | ||||| ||| || |||||||
Sbjct 933 AGGATATGCCATTTAGGAGTGTTACAAC-AAAGGCTA-AGCGACCTGAGAGTGCTTATCA 990
Query 680 TTCTTGATGACGTGAAG-GAGGCAGAGCAACTAGAGGTTTTGGCTAAT-AT-CAAGT-GG 735
|||||||||| |||| | || | ||||| || ||| ||||||||| | | | | ||
Sbjct 991 TTCTTGATGATGTGA-GTGATATAAAGCAATTAAAGGCTTTGGCTAAGGAAACTACTTGG 1049
Query 736 TTTGGTCCTGGAAGTAGAATCATAGTGATCA-CTGAAAACAAAGATATTTTGGTGCAACA 794
||||||||||||||||| || || |||| || | |||||||||||| ||||| |||||
Sbjct 1050 TTTGGTCCTGGAAGTAGGATTATTGTGA-CAACCGAAAACAAAGATCTTTTGCAGCAACG 1108
Query 795 TGGTATATGTGATA-TA--TACCATGTGGGTTTTCCATC-ACAAGAAGATGCTCTA-AAG 849
||| || | ||| || |||||||| || || ||||| | | ||||| ||||| ||
Sbjct 1109 TGGCATC-G--ATAGTACGTACCATGTAGGATTCCCATCTAGA-GAAGAAGCTCTTGAA- 1163
Query 850 ATCTTTTGTCTATATGCTTTTAGA-CAAACCTCTCCACCTTATG 892
||||| ||| || ||||||| || |||| |||||||||| |||
Sbjct 1164 ATCTTCTGTAAATTTGCTTTT-GAACAAAGCTCTCCACCTCATG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5