BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908089
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66110.1 | Symbols: | Family of unknown function (DUF577) |... 1349 0.0
> AT1G66110.1 | Symbols: | Family of unknown function (DUF577)
| chr1:24609094-24610232 REVERSE LENGTH=1017
Length=1017
Score = 1349 bits (730), Expect = 0.0
Identities = 900/980 (92%), Gaps = 19/980 (2%)
Strand=Plus/Plus
Query 1 ATGACATCTCCTCATGACGACGAAGCTTCTTCATCAAACCCTCCTCCACCACTAACCGCA 60
||||| |||| |||| |||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGACTTCTCATCATTACGACGTAGCTTCTTCGTCAAACCCTCCTCCACCACTCACCGCA 60
Query 61 TCACGTATCTACATCGGAAACAAAGCAAAAGAGATTCTCGCAACACGTGACATCACCGGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TCACGTATCTACATCGGAAACAAAGCAAAAGAGATTCTCGCAACACGTGACATCACCGAA 120
Query 121 ATCACAAAACTCGTCACTAACCTCTGTTACGGTAAAGAAAC--AG--A---TC--AATCT 171
||||||||||||||||||| |||||||||||| |||||||| || | || ||||
Sbjct 121 ATCACAAAACTCGTCACTACCCTCTGTTACGGCAAAGAAACAGAGCAATCTTCTTCATCT 180
Query 172 TCAAAGCTTCTCTACGAAACCTTCTCAAAACATTTCCCAAACATTTTAGTCTCAAAACTC 231
|||||||||||||| ||| |||| |||||||||||||||| || |||||||||||||||
Sbjct 181 TCAAAGCTTCTCTATGAAGTCTTCACAAAACATTTCCCAAATATCTTAGTCTCAAAACTC 240
Query 232 CTCCAAATCTACAGTTTCGGTACCGATATAACCCCGAAGATTCGATCTTTTTCAGTCTAT 291
|||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 241 CTCCAAATCTACAGTTCCGGTACCGATATAACCCCAAAGATTCGATCTTTCTCACTCTAT 300
Query 292 CTCCTCGATTCACTTCTCATGGATATCGACGATTTACGCGGTGGTTTGAAGAA-AGAGTC 350
|| |||||||||||||||| ||||||||||||||| || |||||||| || || ||||||
Sbjct 301 CTTCTCGATTCACTTCTCACGGATATCGACGATTTCCGTGGTGGTTT-AAAAACAGAGTC 359
Query 351 TTTGAATGATATCAAGAACCATGTAAGTTCTTGCCTTCTCACGCAAGAAACTTC-TGATG 409
|||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||| | |||
Sbjct 360 TTTGGATGTTATCAAGAACCGTGTAAGTACTTGCCTTCTCTCGCAAGAAACTTCAT-ATG 418
Query 410 AAGACTTTAAACTCCTCTCAAGAATCGTATCTCGTGTCTCTGTTGATGTTTTCATTGCA- 468
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 419 AAGACTTTAAACTCCTCTCAAGAATCGTATCTCGTGTCTGTGTTGATGTTTTCATTGGAG 478
Query 469 AGCAAGCCATGGTACGAGCTCTGTTCTTATATTCTTTCATTAGATGGGAATAAAAAAGCT 528
| ||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 A-CAAACCTTGGGACGAGCTCTGTTCTTATATTCTCTCATTAGATGGGAATAAAAAAGCT 537
Query 529 CTGTTGTTGTTTAGTGAATTGCCAAC-GCTTCTTGATGAAGAGTTCTTGATGCCGTTGTT 587
|| ||| |||| |||||||||||||| | | ||||||||||||||||| |||||||||||
Sbjct 538 CTCTTGATGTTCAGTGAATTGCCAACAG-TCCTTGATGAAGAGTTCTTAATGCCGTTGTT 596
Query 588 GGAGAATGGTTTTGGTTTAAAGATTGTTAATGTGTTGTTGATGAATCAAGATTATGATGA 647
||| |||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 597 GGATAATGGTCTAGGTTTAAAGATTGTTAGTGTGTTGTTGATGAATCAATATTATGATGA 656
Query 648 AGAAGAATGGTGCTTAGGTTTAGAAGCTGGGTTTAGTTTGATACTTCAGCTTGTGAATTT 707
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGAAGAATGGTGTTTAGCTTTAGAAGCTGGGTTTAGTTTGATACTTCAGCTTGTGAATTT 716
Query 708 GAAGAATAAGAGTTTGGTTTGGGATTTGGTTTACGTGATTGTGAAATCGGTTTGGGAGAT 767
| | || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 GGACAAGAAGAGTTTGGTTTGGGATTTGGTTTACGTGATTGTGAAATCGATTTGGGAGAT 776
Query 768 GGTTAATGTGAAGAGAAGAGAGGTTGTTGTGCGTAAAGGGTTTGTTAGAGTTGCTAAGAA 827
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 777 GGTTAATGTGAAGAGAAGAGAGATTGTTGTGCGTAAAGGGTTTGTTAGAGTTGCGAAGAA 836
Query 828 AGTTAGAAGAGAAGCTTTGAGGTTTCGTGAG-CATGAGTATGAAGTTGTGTCACGTTTAG 886
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 837 AGTGAGAAGAGAAGCTTTGAGGTTTCGTGAGGC-TGAGTATGAAGTTGTGTCACGTTTAG 895
Query 887 GTTTGATGATACAGAGGATTAATGGACTTGGTGAAGTTACGATGATGATGGTGACGATGA 946
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 896 GTTTGATGATGCTGAGGATTAATGGACTTGGTGAAGTTACGATGATGATGGTGACTTTGA 955
Query 947 TTCATGAAGTTCTTGAGAGG 966
|||| ||| |||||||||||
Sbjct 956 TTCACGAAATTCTTGAGAGG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5