BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908102
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66180.1 | Symbols: | Eukaryotic aspartyl protease family p... 1168 0.0
AT5G37540.1 | Symbols: | Eukaryotic aspartyl protease family p... 558 3e-158
> AT1G66180.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:24647188-24648813 FORWARD LENGTH=1626
Length=1626
Score = 1168 bits (632), Expect = 0.0
Identities = 728/774 (94%), Gaps = 8/774 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCCCATTCTAAAACCACtcttcttcttcttcttcttcctcttcaactatgtatct 60
||||||||||||| ||||||| | |||||||||||||||| | | |||||||||| |||
Sbjct 34 ATGTCTCCCATTCCAAAACCA--C-TCTTCTTCTTCTTCTT-C-C-TCAACTATGTGTCT 87
Query 61 ctctcaacctcactctccctccacctcccactcacatctctctctatctcccccaccaca 120
||||||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 88 CTCTCAACCTCACTCTCTCTTCACCTCCCACTCACATCTCTCCCTATCTCCACCACCACA 147
Query 121 aactctcaccgcttcaccacctctctcctctcccGGAAAACCCCATCTCCGTCGTCTCCA 180
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 148 AACTCTCACCGCTTCACCACCTCCCTCCTCTCCCGGAAAAACCCATCTCCGTCGTCTCCA 207
Query 181 CCTTACAACTTCCGATCAAGATTCAAATACTCAATGGCTTTAATCATCTCACTCCCCATA 240
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 208 CCATACAACTTCCGATCAAGATTCAAATACTCAATGGCTCTAATCATCTCACTCCCCATA 267
Query 241 GGAACACCACCACAAGCTCAACAAATGGTTCTTGATACCGGAAGCCAACTTTCTTGGATC 300
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 268 GGAACACCACCACAAGCTCAACAAATGGTTCTTGACACTGGAAGCCAACTTTCTTGGATC 327
Query 301 CAATGTCATCGTAAAAAGCTTCCTCCAAAACCTAAAACatcttttgatccatctctttct 360
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 328 CAATGTCATCGTAAAAAGCTTCCTCCAAAACCAAAAACATCATTTGATCCATCTCTTTCT 387
Query 361 tcttctttctctactttaccttgctctcatcctctttGTAAACCAAGAATTCCCGATTTT 420
||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 388 TCTTCTTTCTCAACTTTGCCTTGCTCACATCCTCTTTGTAAACCGAGAATTCCCGATTTT 447
Query 421 ACCCTTCCCACTTCTTGTGACTCGAACCGGTTATGTCATTACTCTTACTTCTACGCTGAT 480
|||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 448 ACCCTTCCTACTTCTTGTGACTCCAACAGGTTATGTCACTACTCTTACTTCTACGCTGAT 507
Query 481 GGAACCTTCGCTGAGGGTAATCTCGTCAAAGAAAAAATCACTTTCTCAAATACCGAAATT 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 508 GGAACCTTCGCTGAGGGTAATCTCGTTAAAGAAAAAATCACTTTCTCAAATACCGAAATT 567
Query 541 ACCCCTCCTTTGATTCTTGGATGTGCAACGGAGTCTTCTGATGATAGGGGTATTTTGGGG 600
|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 568 ACCCCTCCTTTGATTCTTGGTTGTGCTACTGAGTCTTCTGATGATAGGGGCATTTTGGGA 627
Query 601 ATGAATCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTACAAAGTTCTCTTATTGT 660
||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 628 ATGAACCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTTCGAAGTTCTCTTATTGC 687
Query 661 ATCCCTCCTAAATCAAACCGGCCCGGTTTTACTCCAACCGGTTCGTTTTACCTCGGAGAT 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 688 ATCCCTCCCAAATCAAACCGGCCCGGTTTTACTCCAACCGGTTCGTTTTACCTTGGTGAT 747
Query 721 AACCCGAATTCTAAA-GGATTCAAATACGTTTCTTTGTTGACATTTCCTGAAAG 773
||||||||||| | | || ||||||||||||||||||||||| |||||||||||
Sbjct 748 AACCCGAATTC-ACACGGTTTCAAATACGTTTCTTTGTTGACTTTTCCTGAAAG 800
Score = 315 bits (170), Expect = 7e-85
Identities = 192/203 (95%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 773 GAGTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGATGGGATTCACT 832
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1124 GAGTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGGTGGGATTCATT 1183
Query 833 GTGTTGGAATCGGACGGTCGAGTATGCTTGGAGCAGCTAGTAATATAATCGGGAACGTTC 892
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1184 GCGTTGGAATCGGACGGTCGAGTATGCTTGGAGCTGCTAGTAATATAATCGGGAACGTTC 1243
Query 893 ATCAACAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTCGCTAGAG 952
|||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||
Sbjct 1244 ATCAGCAAAATCTTTGGGTTGAGTTCGATGTGACCAATAGAAGAGTGGGTTTCGCTAAAG 1303
Query 953 CTGATTGTAGCAGAATACTGTGA 975
|||||||||||||| || |||||
Sbjct 1304 CTGATTGTAGCAGAGTAGTGTGA 1326
> AT5G37540.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:14912835-14914431 FORWARD LENGTH=1597
Length=1597
Score = 558 bits (302), Expect = 3e-158
Identities = 635/784 (81%), Gaps = 69/784 (9%)
Strand=Plus/Plus
Query 32 tcttcttcttcctcttcaact-atgtatctctctca---ac--c-tcactctccctccac 84
||||||||||| ||| | ||| | || ||||||||| | | || || || ||||||
Sbjct 71 TCTTCTTCTTCTTCTGCTACTCA-GTTTCTCTCTCATGGTCTTCGTCTCTTTCTCTCCAC 129
Query 85 ctcccactcacatctctctctatctc-c-cccaccacaaact-ctcac-cgcttcaccac 140
| || ||||||||||| || |||| | || |||||||||| ||| | | ||||| ||
Sbjct 130 TTTCCTCTCACATCTCT-TC-GTCTCACTCCAACCACAAACTCCTC-CTC-CTTCAAAAC 185
Query 141 ctctctcc--tctc-ccGGAAAACCCCATCTCCGTCGTC-TCCACCTTACAAC-TTCCGA 195
||| |||| |||| |||| || |||||||||| |||| | | || ||| || ||||||
Sbjct 186 CTCCCTCCTTTCTCGCCGG--AA-CCCATCTCCGCCGTCGT-CTCCGTAC-ACTTTCCGA 240
Query 196 TC-AAGATTCAAATACTCAATGGCTTTAATCATCTCACTCCCCATAGGAACACCACCACA 254
|| || | ||||||||||||||||| ||||| |||| || ||||||||||||||| | |
Sbjct 241 TCAAACA-TCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCATCTC- 298
Query 255 AGCTCAACAA-A--TGGTTCTTGATACCGGAAGCCAACTTTCTTGGATCCAATGTCAT-- 309
|| || |||| | | |||||||| |||||||||||||| || ||||||||||| |||
Sbjct 299 AG-TC-ACAAGAGCTAGTTCTTGACACCGGAAGCCAACTCTCATGGATCCAATGCCATCC 356
Query 310 C--G----T-AA-AAA--GCTTCCTCCAAAACCTAA-AACatcttttgatccatctctt- 357
| | | || ||| |||||||| || || || || |||||||| ||| ||
Sbjct 357 CAAGAAAATCAAGAAACCACTTCCTCC---TCC-AACGACGTCGTTTGATCCTTCT-TTA 411
Query 358 tcttcttctttct-ctactttaccttgctctcatcctctttGTAAACCAAGAATTCCCGA 416
||||| || |||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 412 TCTTCATCGTTCTCCGAC-CTACCTTGCTCTCATCCTCTTTGTAAACCTAGAATTCCCGA 470
Query 417 TTTTACCCTTCCCACTTCTTGTGACTCGAACCGGT-TATGTCATTACTCTTACTTCTACG 475
||||||||||||||| |||||||||||||||| || | ||||| ||||||||||||||||
Sbjct 471 TTTTACCCTTCCCACGTCTTGTGACTCGAACC-GTCTCTGTCACTACTCTTACTTCTACG 529
Query 476 CTGATGGAACCTTCGCTGAGGGTAATCTCGTCAAAGAAAAAATCACTTTCTCAAATACCG 535
|||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| ||
Sbjct 530 CTGATGGAACCTTCGCCGAGGGCAATCTCGTTAAAGAAAAATTCACTTTCTCAAATTCCC 589
Query 536 AAATTACCCCTCCTTTGATTCTTGGATGTGC-AACGGAGTCTTCTGATGATAGGGGTATT 594
||| ||||||||||||||||||||| ||||| || | |||| |||| || | |||||||
Sbjct 590 AAACTACCCCTCCTTTGATTCTTGGTTGTGCTAAAG-AGTCAACTGACGAGAAGGGTATT 648
Query 595 TTGGGGATGAATCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTAC-AAAGTTCTC 653
||||| ||||||| ||||||||| |||||| | || ||||| |||||| | ||| |||||
Sbjct 649 TTGGGAATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATTTCTAAA-TTCTC 707
Query 654 TTATTGTATCCCT-CCTAAATCAAACCGGCCCGGTTTTA-C-TCCAACCGGTTCGTTTTA 710
||| |||||||| || |||||||| |||||||| | | || |||||| ||||||||
Sbjct 708 TTACTGTATCCCAACCCGG-TCAAACCGTCCCGGTTT-AGCCTC-AACCGGCTCGTTTTA 764
Query 711 CCTCGGAGATAACCCGAATTCTAAAGGATTCAAATACGTTTCT-TTGTTGACATTTCCTG 769
|||||||||||||||||||||| || ||||||||||||||| || ||||| ||||||
Sbjct 765 CCTCGGAGATAACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTT-TTGACTTTTCCTC 823
Query 770 AAAG 773
||||
Sbjct 824 AAAG 827
Score = 254 bits (137), Expect = 2e-66
Identities = 172/189 (91%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 775 GTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGATGGGATTCACTGT 834
||||||||||| ||| |||| | || |||||||||||||||||| |||||||||||||
Sbjct 1156 GTTGAGATACTCGTTGAGAAACAAAGCCTTTTGGTTAACGTAGGAGGTGGGATTCACTGT 1215
Query 835 GTTGGAATCGGACGGTCGAGTATGCTTGGAGCAGCTAGTAATATAATCGGGAACGTTCAT 894
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1216 GTTGGAATCGGACGGTCAAGCATGCTTGGTGCAGCTAGTAATATAATCGGGAACGTTCAT 1275
Query 895 CAACAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTC-GCTAGAGC 953
|| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1276 CAGCAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTTAG-TAAAGC 1334
Query 954 TGATTGTAG 962
||| |||||
Sbjct 1335 TGAGTGTAG 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5