BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908122
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66360.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 671 0.0
> AT1G66360.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:24751377-24752834 FORWARD LENGTH=806
Length=806
Score = 671 bits (363), Expect = 0.0
Identities = 447/488 (92%), Gaps = 3/488 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATATGTTAGGTCTTCTAAGACTTCATGTGATTAGAGGTGTTAATCTTGCCATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ATGGAGAATATGTTAGGTCTTCTAAGACTTCATGTGATTAGAGGTGTTAATCTTGCCATC 114
Query 61 AGAGATTCTCATAGCAGCGATCCTTACGTCATTGTCCGTATGGGCAAACAGAAGTTACGA 120
||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 115 AGAGATTCTCAAAGCAGTGATCCTTATGTCATTGTCCGTATGGGAAAACAGAAGCTACGA 174
Query 121 ACCCGTGTGATGAAAAAGAATTTAAATCCGGAATGGAACGAAGACTTGACACTTTCTGTT 180
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 175 ACCCGTGTGATGAAAAAGAATTTGAATACAGAATGGAACGAAGACTTGACACTTTCTGTT 234
Query 181 ACTGATCCAACTCTTCCTGTCAAAATCATGGTGTACGATAGAGACTGGTTCTCAAGGGAT 240
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 235 ACTGATCCAACTCTTCCTGTCAAGATCATGGTGTACGATAGGGACAGGTTCTCAAGGGAT 294
Query 241 GATAAGATGGGAGATGCGGTTTTCCACATTGATCCGTTCCTCGAAGCCATCAGAATCCAA 300
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 295 GATAAGATGGGAGATGCGATTTTTCACATTGATCCGTTCCTTGAAGCCATCAGAATCCAA 354
Query 301 AATCAGCTCGGAGGACTTCCCGATGGGACCGTCATAATGAAGATACAGGCTAGCAGGCAG 360
|| || || |||||||| || || ||||| || ||||||||||||||||| ||||| ||
Sbjct 355 AACCAACTAGGAGGACTACCTGAGGGGACTGTAATAATGAAGATACAGGCAAGCAGACAA 414
Query 361 AACTGCTTGTCAGAAGAGAGCAAGATTGTGTGGCACAAAGGAAAAAAGATTGTCCAAAAT 420
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 415 AACTGCTTGTCAGAAGAGAGCAAGATTGTATGGCACAAAGGAAA---GATTGTCCAGAAC 471
Query 421 ATGTTTCTTAGGCTCCAGAACGTTGAGCGCGGGGAGGTCGAGTTGCAGCTTGAGTGGATC 480
||||| |||| ||| ||||| ||||| || |||||| | ||| |||||||||||||||||
Sbjct 472 ATGTTCCTTAAGCTTCAGAATGTTGAACGAGGGGAGATAGAGCTGCAGCTTGAGTGGATC 531
Query 481 GATGTCTC 488
||||||||
Sbjct 532 GATGTCTC 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5