BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908129
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16018.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 206 5e-52
AT2G16020.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 152 7e-36
> AT2G16018.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 10 Blast hits
to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:6972222-6973705 REVERSE
LENGTH=988
Length=988
Score = 206 bits (111), Expect = 5e-52
Identities = 173/201 (86%), Gaps = 11/201 (5%)
Strand=Plus/Plus
Query 1 ATGACTTCCCTTTTTCTTTCCAATGCGAGCCACTCTCGTTGCTTACCGTTGTCTTCGGTC 60
||||||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct 242 ATGACTTTCCTTTTTCTCTCGAATGCGAGCCACTCTCGTCGCTTACCGTCGTCTTCGGTC 301
Query 61 GCCTTCCTCCTTCTGAGGCCCCCTCGTGCACCACCGCCGGAGCCTCCATCTCCGCCGAAT 120
|||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||| |
Sbjct 302 GCCTTCCTCCTTCTGAGGCCACCTTGTGCACCACCACCAGAGCCTCCATCTCCGCCGACT 361
Query 121 CCACCGGA---------TCCACCAGACTT-TCAGATCTGCTTCACTTTTGTTGATTCTTG 170
|||||||| ||||||||| || |||||||||||||||||||| ||||||||
Sbjct 362 CCACCGGAACCACCGGATCCACCAGA-TTCTCAGATCTGCTTCACTTTTGCTGATTCTTA 420
Query 171 TACCCAGCCGGCGAGCTCCTC 191
| | ||| || |||||||||
Sbjct 421 TGCTCAGTCGTTGAGCTCCTC 441
> AT2G16020.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:6973356-6973586 FORWARD LENGTH=231
Length=231
Score = 152 bits (82), Expect = 7e-36
Identities = 100/109 (92%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1 ATGACTTCCCTTTTTCTTTCCAATGCGAGCCACTCTCGTTGCTTACCGTTGTCTTCGGTC 60
||||||| ||||||||| || |||||||||||||||||| ||||||||| ||||||||||
Sbjct 109 ATGACTTTCCTTTTTCTCTCGAATGCGAGCCACTCTCGTCGCTTACCGTCGTCTTCGGTC 50
Query 61 GCCTTCCTCCTTCTGAGGCCCCCTCGTGCACCACCGCCGGAGCCTCCAT 109
|||||||||||||||||||| ||| |||||||||| || ||||||||||
Sbjct 49 GCCTTCCTCCTTCTGAGGCCACCTTGTGCACCACCACCAGAGCCTCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5