BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908135
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1018 0.0
AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 568 4e-161
> AT4G10490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:6483867-6485360
FORWARD LENGTH=1261
Length=1261
Score = 1018 bits (551), Expect = 0.0
Identities = 656/706 (93%), Gaps = 10/706 (1%)
Strand=Plus/Plus
Query 71 tctcCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGAC 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGAC 439
Query 131 TCCATTGTTATCCTATCGAAGATTTCATTCAC-GAATGGCCCTCAACTCCAGTT-TCTTT 188
||||||| || ||||||||||||||||| || |||||||||||||| || | | |||||
Sbjct 440 TCCATTGCTACCCTATCGAAGATTTCAT-CAATGAATGGCCCTCAACACC-GATCTCTTT 497
Query 189 TAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGA 248
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 498 CAGAGAAGTCACAGCCGAATACGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGA 557
Query 249 GGCAATCTCAGAGAGCTTAGGCCTTGTGAAAGACCGTGTAAGCAATACTTTAGGAAAACA 308
||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||
Sbjct 558 GGCAATCTCAGAGAGCTTAGGTCTTGCGAAAGACCGTGTAAGCAATACAATAGGCAAACA 617
Query 309 CGGTCAACACATGGCTATAAACTATTATCCGCCG-TGTCCGCAACCCGAGCTAACTTACG 367
||||||||||||||||| ||||| ||||| ||| ||||| ||||| |||||||||||||
Sbjct 618 TGGTCAACACATGGCTATTAACTACTATCC-CCGGTGTCCTCAACCAGAGCTAACTTACG 676
Query 368 GACTTCCCGGACATAAAGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTG 427
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GACTTCCGGGGCATAAAGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTG 736
Query 428 GTTTACAGGT-TTTCAAAGACGGTAAATGGATTGCTGTTAATCCTGTTCCCAACACTTTT 486
|||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 737 GTTTACAGGTGTTT-AAAGATGGTAAATGGATCGCTGTTAATCCTGTTCCCAACACTTTC 795
Query 487 ATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATACAAGAGTGTGCTA 546
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 796 ATAGTCAACCTTGGTGACCAAATGCAGGTTATAAGCAATGAAAAATACAAGAGTGTTCTT 855
Query 547 CACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACTGACATTCTACTGTCCT 606
|||||||| |||||||||| ||||| ||| ||||||| |||| ||||||||||||||||
Sbjct 856 CACAGAGCGGTTGTGAACAGCGACATGGAGCGGATATCGATACCGACATTCTACTGTCCT 915
Query 607 TCTGAAGATGCTATGATTGGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCAT 666
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 916 TCTGAAGATGCTGTGATTAGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCCT 975
Query 667 GCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTTTGGGACACAGCATTT 726
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 976 GCTATTTACAGAAACTTTACATATGCTGAATATTTTGAAAAGTTTTGGGACACAGCATTT 1035
Query 727 GCA-ACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCACCGCCTAA 771
| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1036 G-ATACTGAGAGCTGTATTGACTCGTTCAAAGCATCCACCGCCTAA 1080
> AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:6491017-6492476
FORWARD LENGTH=1256
Length=1256
Score = 568 bits (307), Expect = 4e-161
Identities = 579/707 (82%), Gaps = 32/707 (5%)
Strand=Plus/Plus
Query 71 tctcCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCT-AACTGGAGAGACTTCCTTCGA 129
||||||| ||||||||||| | ||| ||||||| | |||||||||||||||||| ||
Sbjct 425 TCTCCACCAGTTTCAACGTCGGCGCAGACAAAGTCT-TGAACTGGAGAGACTTCCTTAGA 483
Query 130 CTCCATTG-TTATCCTATCGAAGATTTCATTC-ACGAATGGCCCTCAACT-CCAGTTTCT 186
|||||||| || ||| || |||||||||| || | |||||||| || | | ||| | |||
Sbjct 484 CTCCATTGCTT-TCCCATAGAAGATTTCA-TCGAAGAATGGCCATCTAGTCCCA-TCTCT 540
Query 187 TTTAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTT 246
|| ||||||||||||||||||||||| || ||||| ||||| |||||| ||| |||||||
Sbjct 541 TTCAGAGAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTTCTT 600
Query 247 GAGGCAATCTCAGAGAGCTTAGGCCTTGTGAAA--GACCGTGTAAGCAATACT-TTAGGA 303
||||| ||||||||||| ||||||| | ||||| |||| | ||||||||| | |||||
Sbjct 601 GAGGCCATCTCAGAGAGTTTAGGCC-T-TGAAAGCGACCATATAAGCAATA-TATTAGGC 657
Query 304 AAACACGGTCAACACATGGC-TATAAACTATTATCCGCCGTGTCC-GCAACCCGAGCTAA 361
||||||| |||||||||||| | | ||||| |||||||||||||| | ||||||||||||
Sbjct 658 AAACACGCTCAACACATGGCGT-TTAACTACTATCCGCCGTGTCCAG-AACCCGAGCTAA 715
Query 362 CTTACGGACTTCCCGGACATAAAGATGCAAAC-TTGATCACTGTTCTTCTTCAAGATGAA 420
||||||||||||||||||||||||| ||| | || |||||||| ||||||||||| ||
Sbjct 716 CTTACGGACTTCCCGGACATAAAGACCCAACCGTT-ATCACTGTCCTTCTTCAAGACCAA 774
Query 421 GTCTCTGGTTTACAGGT-TTTCAAAGACGGTAAATGGATTGCTGTTAATCCTGTTCCCAA 479
||||||||||| || || ||| || || | ||||||| | ||||||| ||| |||||||
Sbjct 775 GTCTCTGGTTTGCAAGTCTTT-AAGGATGATAAATGGGTCGCTGTTAGTCCAATTCCCAA 833
Query 480 CACTTTTATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATACAAGAG 539
|||||| || ||||| | || ||||| |||||||| ||||||||||| |||||||||||
Sbjct 834 CACTTTCATCGTCAATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACAAGAG 893
Query 540 TGTGCTACACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACTGACATTCTA 599
|||||| || ||||| || || |||| ||| || ||| || |||| || | ||| |||||
Sbjct 894 TGTGCTCCATAGAGCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTTTCTA 953
Query 600 CTGTCC-TTCTGA-AGATGCTA-TGATTGGTCCAGCACAAGAGCTGATCAATGAGGAAGA 656
| ||| ||| | |||||| | |||||||||||||||| |||||| ||||||| | |
Sbjct 954 TT-TCCCTTCA-ACAGATGC-AGTGATTGGTCCAGCACACGAGCTGGTCAATGA--AC-A 1007
Query 657 AGACTCTCATGCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTTTGGGA 716
|||||||| ||| |||||||||| || | | || |||||||| || ||||||||| |
Sbjct 1008 AGACTCTCTTGCCATTTACAGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTTGGAA 1067
Query 717 CACAGCATTTGCAACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCA 763
|| | || |||| |||| ||||||| | ||| | ||||||||| |||
Sbjct 1068 CAGATCACTTGCTACTGCGAGCTGTCTAGACGCCTTCAAAGCT-CCA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5