BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908150

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30820.1 | Symbols:  | CTP synthase family protein | chr1:10...   230    2e-59


> AT1G30820.1 | Symbols:  | CTP synthase family protein | chr1:10944913-10949458 
REVERSE LENGTH=2480
Length=2480

 Score =  230 bits (124),  Expect = 2e-59
 Identities = 248/302 (82%), Gaps = 32/302 (11%)
 Strand=Plus/Plus

Query  394   TTGAACTTCCAAACCATCCTTTCTTCATCGGTGCTCAATTCCACCCAGAGTACAAATCCA  453
             ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct  1871  TTGAACTTCCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCA  1930

Query  454   GACCCGGGAAAGCTTCTCCTCTCTGTTCATAGGTCTGAGCCTATTTGTCATCGATCACAA  513
             |||||||||||||||||||||| | ||  |||| ||   |  ||| | ||  |  ||   
Sbjct  1931  GACCCGGGAAAGCTTCTCCTCTGTTTT--TAGGGCT---C--ATT-G-CA--G--CA---  1974

Query  514   CTCATTGCAGCATCTTGTGGTGAGCTAGACACAGTCATGAATCAAGCCTCTGTTCATCAA  573
              ||   |     |   |||| ||| ||||||||||| |||||| ||| |||| |||||||
Sbjct  1975  -TC---G-----T---GTGGCGAGTTAGACACAGTCCTGAATCCAGCTTCTGCTCATCAA  2022

Query  574   CAT-CTGATTAGTAACGGTCCGAA-AAACGTTTTTGTCAGTGGAACCTCCAAGAAAGCTC  631
             ||| | ||||||||||||||| || |||| ||||  ||| |||||| ||||||||| |||
Sbjct  2023  CATTC-GATTAGTAACGGTCC-AACAAACATTTTCATCAATGGAACTTCCAAGAAATCTC  2080

Query  632   CTAATGGCTTGGCTGATGTAAGATACAATAACGGATACTGCAACGGCCTCTACACTAGAT  691
             | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct  2081  CCAATGGCTTGGCTGATGTAAGATATAATAACGGCTACTGCAATGGCCTCTACACTAGAT  2140

Query  692   AG  693
             ||
Sbjct  2141  AG  2142


 Score =  189 bits (102),  Expect = 3e-47
 Identities = 114/120 (95%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  1     CTCTTTGATGCCTATCTCTCTGTCTTGAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGC  60
             |||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1264  CTCTCTGATGCTTATCTCTCTGTCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTCGC  1323

Query  61    AAAAAGCTCGAAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAGGAAACTGCGAAAGAG  120
             |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct  1324  AAAAAGCTCGTAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAACTGAGAAAGAG  1383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33556410196


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5