BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908155

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c...   507    7e-143
  AT3G31005.1 | Symbols:  | Pseudogene of AT1G66520; PDE194 (PIGM...   337    9e-92 


> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | 
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321

 Score =  507 bits (274),  Expect = 7e-143
 Identities = 360/401 (90%), Gaps = 8/401 (2%)
 Strand=Plus/Plus

Query  219   AGCAGTTCCCCAAGATGATCCTAAAGCTACCTTAGCTCCAAAGTTGGCTCCAGATGAGGC  278
             ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct  723   AGCAGCTCCCCAAGATGATTCTAAAGCTACCTTAGCTCCAAAGATAGCTCCAGATGAGGC  782

Query  279   TTGGCTCTCTTTTGACCAGGAAGCTTTTGTTCTGCATAACAAGGTTCGTGCATTCGCAGG  338
             ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  783   TTGGCTCTCTTTTGACCAGGAAGCTTTTGTTCTACATAACAAGGTTCGTGCATTTGCAGG  842

Query  339   ATGGCCAGGAACATGCGCTAAATTTGTAGTC-TTCGATGACAAAAGCAGTCAGGAAAAGG  397
             |||||| |||||| | || ||| |||||||| || ||||| |||||| ||||| |||| |
Sbjct  843   ATGGCCGGGAACACGAGCAAAAGTTGTAGTCCTT-GATGAGAAAAGCGGTCAGCAAAATG  901

Query  398   TGCTCGAGCTTAAAATCATCACCACTCGAGTATGTCAA-GCTTTGGAAAT-CTGGGATGG  455
             |||| ||||||||||| ||  ||||||||||||| ||| | | ||||||| | || || |
Sbjct  902   TGCTAGAGCTTAAAATTATGTCCACTCGAGTATG-CAAAGATCTGGAAATTCAGG-ATAG  959

Query  456   TGAACAAGATTATGTAACTTTCAAGAAAGGTTCACTAATGTTTCCCTGCAAAGGAGATAC  515
             ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct  960   TGAACAAGATTATGTAACTTTCAAGAAAGGTTCACTAATATTTCCCTGCAGAGGAGGTAC  1019

Query  516   AGCTTTAGAGGTACTAGAAGTCCGGCCTTC-TGGTAAGAAAGCGATCAAGGCAGCCGCAT  574
             ||||||||||||||| ||||||| || ||| |||||||||||| ||||| ||||| || |
Sbjct  1020  AGCTTTAGAGGTACTGGAAGTCCAGC-TTCCTGGTAAGAAAGCCATCAACGCAGCTGCTT  1078

Query  575   TTTGGAATGGCTTGAGAGGTCAAAAGCTGCAGAAGCTATGA  615
             ||||||||||||||||||||||||||||| |||||||||||
Sbjct  1079  TTTGGAATGGCTTGAGAGGTCAAAAGCTGAAGAAGCTATGA  1119


 Score =  296 bits (160),  Expect = 2e-79
 Identities = 192/207 (93%), Gaps = 3/207 (1%)
 Strand=Plus/Plus

Query  10   ACAGTGAACATGCACCCAAGTTTGTTGCCCCTTTACCGTGGTGCTGCTCCAGTTCAAAGA  69
            ||||||||||| |||||||||||| |||| || ||||||||||| |||||||||||||||
Sbjct  457  ACAGTGAACATACACCCAAGTTTGCTGCCGCTGTACCGTGGTGCAGCTCCAGTTCAAAGA  516

Query  70   GCATTACAGGATGGTGTCCCTGAAACAGGAGTAACATTAGCATTTACGGTGGTGCGTAAG  129
            |||||||||||||||||||| |||||||||||| |||||||||||||  | |||||||||
Sbjct  517  GCATTACAGGATGGTGTCCCGGAAACAGGAGTATCATTAGCATTTAC--T-GTGCGTAAG  573

Query  130  TTAGATTCAGGGCCAGTGATTGCCTCTAAGAGGTTTCAAGTGGATGATCTAATTAAGGCA  189
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  574  TTAGATGCAGGGCCAGTGATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAGGCA  633

Query  190  CCAGAACTGCTCTCGTTCCTAGTTTCT  216
            |||||||| |||||||||||| |||||
Sbjct  634  CCAGAACTACTCTCGTTCCTATTTTCT  660


> AT3G31005.1 | Symbols:  | Pseudogene of AT1G66520; PDE194 (PIGMENT 
DEFECTIVE 194); formyltetrahydrofolate deformylase/ hydroxymethyl-, 
formyl- and related transferase | chr3:12662598-12670958 
REVERSE LENGTH=398
Length=398

 Score =  337 bits (182),  Expect = 9e-92
 Identities = 262/300 (87%), Gaps = 7/300 (2%)
 Strand=Plus/Plus

Query  319  AAGGTTCGTGCATTCGCAGGATGGCCAGGAACATGCGCTAAATTTGTAGT-CTTCGATGA  377
            ||||||||| |||| ||||||||||| |||||| | || ||| ||||||| ||| |||||
Sbjct  103  AAGGTTCGTCCATTTGCAGGATGGCCGGGAACACGAGCCAAAGTTGTAGTCCTT-GATGA  161

Query  378  CAAAAGCAGTCAGGAAAAGGTGCTCGAGCTTAAAATCATCACCACTCGAGTATGTC-AAG  436
            ||||||| | ||| |||| ||||| ||||||||||| ||  ||||| ||||||| | |||
Sbjct  162  CAAAAGCGGCCAGCAAAATGTGCTAGAGCTTAAAATTATGTCCACT-GAGTATG-CAAAG  219

Query  437  CTTTGGAAATCTGGGATGGTGAACAAGATTATGTAACTTTCAAGAAAGGTTCACTAATGT  496
             ||||||||||  ||||||| ||||||| |||||||| |||||||||||||||||||| |
Sbjct  220  ATTTGGAAATCCAGGATGGTAAACAAGACTATGTAACATTCAAGAAAGGTTCACTAATAT  279

Query  497  TTCCCTGCAAAGGAGATACAGCTTTAGAGGTACTAGAAGTCCGGCCTT-CTGGTAAGAAA  555
            ||||||||| ||||| |||||||||||||||||||||||||| | ||| |||||||||||
Sbjct  280  TTCCCTGCAGAGGAGGTACAGCTTTAGAGGTACTAGAAGTCCAG-CTTGCTGGTAAGAAA  338

Query  556  GCGATCAAGGCAGCCGCATTTTGGAATGGCTTGAGAGGTCAAAAGCTGCAGAAGCTATGA  615
            || ||||| ||||| || |||||||||||||||||||||||||||||| ||||| |||||
Sbjct  339  GCCATCAATGCAGCTGCTTTTTGGAATGGCTTGAGAGGTCAAAAGCTGAAGAAGATATGA  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29638146730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5