BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908158

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30820.1 | Symbols:  | CTP synthase family protein | chr1:10...   193    2e-48


> AT1G30820.1 | Symbols:  | CTP synthase family protein | chr1:10944913-10949458 
REVERSE LENGTH=2480
Length=2480

 Score =  193 bits (104),  Expect = 2e-48
 Identities = 116/122 (95%), Gaps = 0/122 (0%)
 Strand=Plus/Plus

Query  107   GCCTCTTTGATGCCTATCTCTCTGTCTTGAAGGCTCTCTTACATGCTTCTGTGGCTTGTC  166
             |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1262  GCCTCTCTGATGCTTATCTCTCTGTCTTAAAGGCTCTCTTACATGCTTCTGTGGCTTGTC  1321

Query  167   GCAAAAAGCTCGAAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAGGAAACTGCGAAAG  226
             |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  1322  GCAAAAAGCTCGTAGTTGATTGGGTTCCAGCTTGTGATCTCGAAAAAGAAACTGAGAAAG  1381

Query  227   AG  228
             ||
Sbjct  1382  AG  1383


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 79/82 (96%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  337   TTGAACTTCCAAACCATCCTTTCTTCATCGGTGCTCAATTCCACCCAGAGTACAAATCCA  396
             ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct  1871  TTGAACTTCCAAACCATCCTTTCTTTATCGGTGCTCAATTCCACCCCGAGTTCAAATCCA  1930

Query  397   GACCCGGGAAAGCTTCTCCTCT  418
             ||||||||||||||||||||||
Sbjct  1931  GACCCGGGAAAGCTTCTCCTCT  1952


 Score =  106 bits (57),  Expect = 3e-22
 Identities = 59/60 (98%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  48    GAGATCACAAGCTGGAACCCAATCAACTTCGAGCTTTTTGCGACAAGCCACAGAAGCATG  107
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1362  GAGATCACAAGCTGGAACCCAATCAACTACGAGCTTTTTGCGACAAGCCACAGAAGCATG  1303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5