BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908162
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66520.1 | Symbols: pde194 | formyltransferase, putative | c... 1622 0.0
> AT1G66520.1 | Symbols: pde194 | formyltransferase, putative |
chr1:24816128-24818744 REVERSE LENGTH=1321
Length=1321
Score = 1622 bits (878), Expect = 0.0
Identities = 980/1031 (95%), Gaps = 0/1031 (0%)
Strand=Plus/Plus
Query 1 ATGATACTACGTCGTTTCATCTGCTACAACGCTTCTTCAACTGTTTCATCTATAGCTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ATGATACTACGTCGTTTCATCTGCTACAACGCTTCTTCAACTGTTTCATCTATAGCTCCA 111
Query 61 TCTCCGAAGAAGAAGCCTCTCATCTTCTTAGGCTCTCCTCAGGTCTCCGTGACTGTGCTT 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 112 TCACCGAAGAAGAAGCCTCTCATCTTCTTAGGCTCTCCTCAGGTCTCCGTGAGTGTGCTT 171
Query 121 GAAGCTCTTTTCAATGCATCTGCTGCACCAAACTCTTCCTTTGAGGTTGCAGGCATTGTT 180
||||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||
Sbjct 172 GAAGCTCTTTTCAATGCATCTAATGCTCCAAACTCTTCCTTCGAGGTTGCAGGTATTGTT 231
Query 181 ACACAGCCTCCATCAAGGAGAGATCGGGGTAGAAAAGTGTTGCCTTCGCCTGTAGCGCAA 240
|||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||||
Sbjct 232 ACACAGCCTCCATCAAGGAGAGATAGGGGTAAAAAAGTGTTGCCTTCACCAGTAGCGCAA 291
Query 241 TACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCGGAGAAGGCAGGAGAT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 292 TACGCTCTTGATAAAGGCTTACCTTCTGATCTCATTTTCTCCCCTGAGAAGGCAGGAGAT 351
Query 301 GAAGCATTCTTATCGGCTTTACGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTAT 360
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 GAAGCATTTTTATCGGCTTTAAGAGAGTTGCAACCTGAGCTTTGTATTACAGCAGCTTAT 411
Query 361 GGGAATATATTGCCTACTAAGTTCCTTAAAATTCCATTACATGGGACAGTGAACATACAC 420
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 412 GGGAATATTTTGCCTACTAAGTTCCTTAAGATTCCGGTACATGGGACAGTGAACATACAC 471
Query 421 CCAAGTTTGTTGCCCCTGTACCGTGGTGCAGCTCCAGTTCAAAGAGCATTACAGGATGGT 480
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CCAAGTTTGCTGCCGCTGTACCGTGGTGCAGCTCCAGTTCAAAGAGCATTACAGGATGGT 531
Query 481 GTCCCGGAAACAGGAGTATCATTAGCATTTACCGTGCGAAAGTTAGATGCAGGGCCAGTG 540
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 532 GTCCCGGAAACAGGAGTATCATTAGCATTTACTGTGCGTAAGTTAGATGCAGGGCCAGTG 591
Query 541 ATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAGGCACCAGAACTGCTCTCGTTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 592 ATTGCCTCTAAGAGGTTCCAAGTGGATGATCTAATAAAGGCACCAGAACTACTCTCGTTC 651
Query 601 CTATTTTCTGAAGGTTCAAAGCTTCTTATCCGTGAACTTCCCTCAATATTTGATGGGTCT 660
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 652 CTATTTTCTGAAGGTTCTAATCTTCTTATCCGTGAACTTCCCTCGATATTTGATGGGTCC 711
Query 661 GCAAAATCAAAAGCAGCTCCCCAAGATGATTCTAAAGCTACCTTAGCTCCAAAGATAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GCAAAATCAAAAGCAGCTCCCCAAGATGATTCTAAAGCTACCTTAGCTCCAAAGATAGCT 771
Query 721 CCAGATGAGGCTTGGCTCTCTTTTGACGAGGAAGCTTTTGTTCTACATAACAAGGTTCGT 780
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 772 CCAGATGAGGCTTGGCTCTCTTTTGACCAGGAAGCTTTTGTTCTACATAACAAGGTTCGT 831
Query 781 GCATTTGCAGGATGGCCGGGAACAAGAGCTAAAGTTGTAGTCCTCGATGATAAAAGCGGT 840
|||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||
Sbjct 832 GCATTTGCAGGATGGCCGGGAACACGAGCAAAAGTTGTAGTCCTTGATGAGAAAAGCGGT 891
Query 841 CAGCAAAATGTACTAGAGCTTAAAATCATGTCCACTCGAGTATGCAAAGATCTGGAAATC 900
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 892 CAGCAAAATGTGCTAGAGCTTAAAATTATGTCCACTCGAGTATGCAAAGATCTGGAAATT 951
Query 901 CAGGATGGTGGACAAGATTATGTAACTTTCAAGAAAGGTTCATTGGTGTTTCCCTGTGGA 960
|||||| ||| ||||||||||||||||||||||||||||||| | | |||||||| ||
Sbjct 952 CAGGATAGTGAACAAGATTATGTAACTTTCAAGAAAGGTTCACTAATATTTCCCTGCAGA 1011
Query 961 GGAGGTACTGCTTTAGAGGTACTAGAAGTCCAGCTTCCTGGTAAAAAAGCTATCAACGCG 1020
|||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1012 GGAGGTACAGCTTTAGAGGTACTGGAAGTCCAGCTTCCTGGTAAGAAAGCCATCAACGCA 1071
Query 1021 GCCGCCTTTTG 1031
|| || |||||
Sbjct 1072 GCTGCTTTTTG 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5