BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908190
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro... 1232 0.0
AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2 ... 900 0.0
> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342
FORWARD LENGTH=1230
Length=1230
Score = 1232 bits (667), Expect = 0.0
Identities = 771/822 (94%), Gaps = 4/822 (0%)
Strand=Plus/Plus
Query 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGACT-TGTGTAA 59
|||||||||||||| ||||||||| || |||||||||||||||||||||| | |||||||
Sbjct 119 ATGTCGCAATCAACCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCTTCGA-TCTGTGTAA 177
Query 60 GAGAAATGAGATGCTTACACAAGAGGGTCTTAAAGCTCCGTCTTTCTTGAAGACCGGAAC 119
||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 178 GAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTTTGAAGACTGGAAC 237
Query 120 AACCATTGTCGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCGAC 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 AACCATTGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCAAC 297
Query 180 CGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAACAT 239
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 298 TGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATATGGCACCAAACAT 357
Query 240 ATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAGCTC 299
|||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 358 ATATTGCTGTGGTGCAGGAACTGCGGCTGATACTGAAGCAGTCACTGATATGGTCAGCTC 417
Query 300 ACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTTAAC 359
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| ||
Sbjct 418 ACAGCTGCGATTGCATCGTTACCAGACTGGTCGAGACTCTCGGGTCATTACTGCTTTGAC 477
Query 360 TCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCTTGG 419
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 478 CCTTCTCAAAAAACATCTTTTCAGCTACCAAGGTCATGTCTCTGCTGCTCTTGTACTCGG 537
Query 420 TGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTTTAACTGAAA 478
|||||||||||||||||| ||||||||||||||||| | ||||| |||||| |||||| |
Sbjct 538 TGGAGTTGATATCACTGGTCCACATCTGCATACTATAT-ACCCACACGGTTCAACTGACA 596
Query 479 CTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGCGA 538
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 597 CTCTTCCATTCGCCACAATGGGTTCGGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGCAA 656
Query 539 AGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATATGCT 598
|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 657 AGTATAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTGAATCCATATGCT 716
Query 599 CTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACAAAGG 658
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 CGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCGTGATCACAAAGG 776
Query 659 GGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGCAGCA 718
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAACAAGGAATATCTCAGGAACTACATGGAACCAAACCCAAGAACCTATGTCAGCAGCA 836
Query 719 AAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGCTGG 778
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 837 AAGGCTATTCCTTCACCAAGAAAACTGAGGTTCTTCTCACCAAAATCACCCCATTGCTGG 896
Query 779 AGCGAGTCGAAATTACAGAAGTCGGTGAAGCTATGGAGGAAT 820
||||||||||||| |||||||| |||||||||||||||||||
Sbjct 897 AGCGAGTCGAAATCACAGAAGTTGGTGAAGCTATGGAGGAAT 938
> AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2
| chr5:16248286-16250756 REVERSE LENGTH=1199
Length=1199
Score = 900 bits (487), Expect = 0.0
Identities = 719/831 (87%), Gaps = 15/831 (2%)
Strand=Plus/Plus
Query 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGACT-TGTGTAA 59
|||||||| || | || ||| | || |||| ||||||||||||||||| | |||| ||
Sbjct 150 ATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGA-TCTGTGCAA 208
Query 60 GAGAAATGAGATGCTTACACAAG-AGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACCGGA 117
|| ||||| ||||| |||| || ||||||||||||| ||||| |||| | ||||| |||
Sbjct 209 AAGGAATGATATGCTGACAC-AGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACTGGA 266
Query 118 ACAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGC 176
|| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 267 ACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGC 325
Query 177 GACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAA 236
|| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 326 AACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAA 385
Query 237 CATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAG 296
||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 386 CATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAG 445
Query 297 CTCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTT 356
|||||||||||| |||||| | ||| ||||||| || || ||||| || ||||||| ||
Sbjct 446 CTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATT 505
Query 357 AACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCT 416
|| || ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 506 GACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCT 565
Query 417 TGGTGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTT-TAACT 474
||||||||||||||| || || || ||||| || || || | ||||| |||||| | |||
Sbjct 566 TGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATAT-ACCCACACGGTTCT-ACT 623
Query 475 GAAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAG 534
|| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 624 GACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAA 683
Query 535 GCGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATA 594
|| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 684 GCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATA 743
Query 595 TGCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACA 654
||||||||||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct 744 TGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACT 803
Query 655 AAGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGC 714
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 804 AAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGC 863
Query 715 AGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTG 774
|||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 864 AGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTA 923
Query 775 CTGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 822
||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 924 TTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5