BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908198
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 857 0.0
AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 438 2e-122
> AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:5213081-5215620 FORWARD LENGTH=2540
Length=2540
Score = 857 bits (464), Expect = 0.0
Identities = 508/530 (96%), Gaps = 0/530 (0%)
Strand=Plus/Plus
Query 1 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAATTATAACATG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 615 TTTTTCCAGTGGATTAAGGAGGCTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATG 674
Query 61 ATGTTGCGTATTCTGGGTGTTAATGGACTTGTCGATGAGTTTTGGGGGTTGGTTGATGTG 120
||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 675 ATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTG 734
Query 121 ATGAAGAAGAAAGGACATGGCTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTT 180
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 735 ATGAAGAAGAAAGGGCATGGTTTATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTT 794
Query 181 CAGAAAGATGGGCTGGAGAGTGATTTGGTGAGGCTGAGAAAGCTTTTTGCTTCAGATTGT 240
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 795 CAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGT 854
Query 241 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAA 914
Query 301 TGGGGCGATGATGTGGAGAAACGGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 360
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 915 TGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTA 974
Query 361 GTGAAGATGATTGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGG 420
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 975 GTGAAGATGATTGTGGAACGTCTTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGG 1034
Query 421 TGGATTGATGAGTCTGGTCTCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGG 480
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1035 TGGATTGATGAGTCTGATCTCTTTAAGCATGATGAGAAAACCTATAATGCTATGGCTAGG 1094
Query 481 GTTTTGGGAAAAGAGAAATTTCTCGATAGATTTCAGAACATCGTAGTAGA 530
||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1095 GTTTTGGGAAAAGAGAAGTTTCTTGATAGATTTCAGAACATTGTAGTAGA 1144
> AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:513525-515925 FORWARD LENGTH=2401
Length=2401
Score = 438 bits (237), Expect = 2e-122
Identities = 423/512 (83%), Gaps = 16/512 (3%)
Strand=Plus/Plus
Query 18 GGAGGCTTCTCCTGAGGAACTTAGC-TCGAAGAATTATAACATGATGTTGCGTATTCTGG 76
|||||||| |||| | ||||| | || |||| |||||||| |||| |||||||| | |
Sbjct 487 GGAGGCTTATCCTCAAAAACTT-TCTTCCAAGAGTTATAACACGATGCTGCGTATTTTTG 545
Query 77 GTGTTAATGGACTT-GTCGATGAGTTTTGGGGGTTGGTTGATG-TGATGAAGAAGAAAGG 134
||||||||||| || || |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 546 GTGTTAATGGA-TTAGTTGATGAGTTTTGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGG 603
Query 135 ACATGGCT-TATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGC 193
||||| | | || ||||||||||| || | ||| ||||| || ||| |||||||||| |
Sbjct 604 GCATGG-TGTTTCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTTAAGAAAGATGGAC 662
Query 194 TGGAGAGTGATTTGGTGAGGCTGAGAA-AGCTTTTTGCTTCAGATTGTTTAGATAATTCG 252
| || | |||||||| |||||||| || |||| |||||||||| || | | ||||| ||
Sbjct 663 TAGAAAATGATTTGGAGAGGCTGA-AAGAGCTATTTGCTTCAGGTTCTATGGATAACTCT 721
Query 253 GCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAGTGGGGCGATGAT 312
| || || |||||| |||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 722 GTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTGTGGGGTGCTGAT 781
Query 313 GTGGAGAAACGGGTGAGAGATTTGAATGTT-GAGTTTAAGAGTGATTTAGTGAAGATGAT 371
|| ||||||| | | || |||||||| | | |||||||| |||||| | || |||||| |
Sbjct 782 GTAGAGAAACAGCTAAGGGATTTGAA-GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGT 840
Query 372 TGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGA 431
| |||||| ||||| || || || |||||||||||||||||||| |||||||||||||
Sbjct 841 TTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGA 900
Query 432 GTCTGGTC-TCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGGGTTTT-GGGA 489
|||||| | ||||| ||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 901 GTCTGGAAGT-TTTAAACATGATGAGAAGACGTATAATGCTATGGCCAGGGTTTTAGGGA 959
Query 490 AAAGAGAAATTTCTCGATAGATTTCAGAACAT 521
|| ||||| ||||| ||||| |||||| ||||
Sbjct 960 AA-GAGAAGTTTCTTGATAGGTTTCAGCACAT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5