BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908199

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependen...   388    2e-107
  AT1G66710.1 | Symbols:  | pseudogene, similar to AtPP protein, ...   211    5e-54 
  AT1G66690.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   169    3e-41 


> AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependent 
methyltransferases superfamily protein | chr1:24873291-24874758 
REVERSE LENGTH=1299
Length=1299

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 301/345 (87%), Gaps = 6/345 (2%)
 Strand=Plus/Plus

Query  15   TGGTGGAGAAGGTCCTGAGAGTTATAACCAACAATCTTCGTATCAGAGAGCATTGCTAGA  74
            ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct  98   TGGAGGAGACGGTCCTGAGAGTTATAACCAACAATCCTCGTATCAGAGAGCATTGTTGGA  157

Query  75   AGTGGCAAAGGAAAAGATGACCGAGGCGATCTCAGCGAACCTCAACCTCGATTTGATTTC  134
            || | ||||||| ||||||||| ||||||||||||| || ||| |||| || ||||||||
Sbjct  158  AGCGACAAAGGACAAGATGACCAAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTC  217

Query  135  CAACCAG-TTCAGTATAGCAGACTTCGGTTGTGCGAGTGGACCTAATACTTTTGTGTCAG  193
             || | | |||| | |||| || ||||||||||| ||||||||||| ||||||||| |||
Sbjct  218  GAATC-GCTTCATTGTAGCGGATTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAG  276

Query  194  TCCAAAACATAATTGATGCGGTAGAAGAAAAATACCGTAGAGAAACCGGACAAAACCCGG  253
            | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  277  TTCAAAACATAATAGATGCGGTAGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGG  336

Query  254  CAAACAACATCAAGTTCCAAGTTCTCTTCAATGACTTT-AGCATCAACGATTTCAACACT  312
            || | |||||| |||||||||| ||||||||||| ||| ||| |||| ||||||||||||
Sbjct  337  CAGATAACATCGAGTTCCAAGTCCTCTTCAATGA-TTTCAGCCTCAATGATTTCAACACT  395

Query  313  CTCTTTCAAACACTTCCTCAAGGGAGAAGATACTAT-AGCGCTGG  356
            ||||| || |||||||| |  || |||||||||| | ||||||||
Sbjct  396  CTCTTCCAGACACTTCCACCCGGAAGAAGATACT-TCAGCGCTGG  439


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 132/149 (89%), Gaps = 5/149 (3%)
 Strand=Plus/Plus

Query  386  GGATCATGGACCGTGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACCGGGTACAACC  445
            |||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct  538  GGATTATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACGGGGTTCAACC  597

Query  446  AAGCGGT-AAAAAAGCGTATTTTGATCAATACTCTATCGACACCAATAA-TC--TTGGAT  501
              || || || ||||||||| |||| || ||||||||||||||||| || ||  || |||
Sbjct  598  CCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGACACCAA-AATTCTTTTAGAT  656

Query  502  GCTAGAGCTGAAGAGCTCGTGCCCGGGGG  530
            |||||||||||||||||||||||||||||
Sbjct  657  GCTAGAGCTGAAGAGCTCGTGCCCGGGGG  685


> AT1G66710.1 | Symbols:  | pseudogene, similar to AtPP protein, 
blastp match of 55% identity and 1.0e-92 P-value to GP|7657877|emb|CAB89183.1||AJ245479 
AtPP protein {Brassica napus var. 
napus} | chr1:24878865-24880220 REVERSE LENGTH=1356
Length=1356

 Score =  211 bits (114),  Expect = 5e-54
 Identities = 137/148 (93%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  387  GATCATGGACCGTGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACCGGGTACAACCA  446
            |||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct  672  GATCATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCATCGCGTTCAACCA  731

Query  447  AGCGGTAAA-AAAGCGTATTTTGATCAATACTCTATCGACACCAATAATCT-TGGATGCT  504
            ||||||||| || |||| | ||||||||||||||||||||||||| ||||| ||||||||
Sbjct  732  AGCGGTAAAGAATGCGTGTCTTGATCAATACTCTATCGACACCAAGAATCTATGGATGCT  791

Query  505  AGAGCTGAAGAGCTCGTGCCCGGGGGAT  532
            ||||||||||||||||||||||| ||||
Sbjct  792  AGAGCTGAAGAGCTCGTGCCCGGAGGAT  819


> AT1G66690.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr1:24869554-24870850 
REVERSE LENGTH=1114
Length=1114

 Score =  169 bits (91),  Expect = 3e-41
 Identities = 131/150 (87%), Gaps = 3/150 (2%)
 Strand=Plus/Plus

Query  386  GGATCATGGACCGTGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACCGGGTACAACC  445
            ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct  522  GGATCATGGACCGCGACTCTCCGTTGTGGAACAAAGACATGCAGTGCACCGGGTTCAACC  581

Query  446  AAGCGGTAAA-AAAGCGTATTTTGATCAATACTCTATCGACACCAATAATCTT--GGATG  502
              || || || ||||| ||| |||| || |||||||| |||||||| || |||  |||||
Sbjct  582  CCGCTGTGAAGAAAGCCTATCTTGAGCAGTACTCTATTGACACCAAAAACCTTTTGGATG  641

Query  503  CTAGAGCTGAAGAGCTCGTGCCCGGGGGAT  532
            |||||||||| |||||| ||||||||||||
Sbjct  642  CTAGAGCTGAGGAGCTCATGCCCGGGGGAT  671



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5