BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908209

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43500.1 | Symbols:  | Plant regulator RWP-RK family protein...   508    2e-143


> AT2G43500.1 | Symbols:  | Plant regulator RWP-RK family protein 
| chr2:18061925-18066639 FORWARD LENGTH=3239
Length=3239

 Score =  508 bits (275),  Expect = 2e-143
 Identities = 332/359 (92%), Gaps = 5/359 (1%)
 Strand=Plus/Plus

Query  157   CTCCAGGAAGCTAAATTTGTCGACAATGCCATTAAGTTAGAAGAGCATATTACCATGAAC  216
             |||||||||||||||| |||||||||||||||||||||||| ||| |||  |||||||| 
Sbjct  2367  CTCCAGGAAGCTAAATCTGTCGACAATGCCATTAAGTTAGAGGAGGATACAACCATGAAT  2426

Query  217   CAAGCAAGATCAGGATCTTTCATGGAGGTTAATGTTAGTGGTCAACCATGGGGTTGGATG  276
             ||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||
Sbjct  2427  CAAGCAAGACCAGGATCATTCATGGAGGTTAATGCTAGTGGTCAGCCATGGGCTTGGATG  2486

Query  277   G-CAGAACAGTCTAGCTTGAATGGCAGTGAAGGAATAAAAG-GCGTTTGCAACTTAAGCT  334
             | || || ||||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  2487  GCCA-AAGAGTCTGGCTTGAATGGCAGTGAAGGAAT-AAAGAGCGTTTGCAACTTAAGCT  2544

Query  335   CTCTCAAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGAAC  394
             || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2545  CTGTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGAAC  2604

Query  395   CTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATTGCTCAGGTGCAGTATCTG  454
             ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct  2605  CTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGCGCAGT-TCTG  2663

Query  455   GGCGGAGGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAATAA  513
              | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  2664  CGTGGAAGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAGTAA  2722


 Score =  161 bits (87),  Expect = 5e-39
 Identities = 133/152 (88%), Gaps = 15/152 (10%)
 Strand=Plus/Plus

Query  1     ATGTCCTCTGATAAAGAAAACAGTATCACAGTATCTCAAGGCACTTTGGAGAAGG-T-T-  57
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | 
Sbjct  1869  ATGTCCTCTGATAAAGAAAACAGTATCACAGTATCTCAAGGCACTTTGGAGCAGGATGTG  1928

Query  58    ----ATG--AG-----CA-AGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGC  105
                 | |  ||     || |||||||||||||||||||||||||||||||||||||||||
Sbjct  1929  AGCAAAGCAAGAACACCAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGC  1988

Query  106   GCTCTCCAACAACACTTTTTTGGGAGTCTAAA  137
             ||||||||||||||||| | ||||||||||||
Sbjct  1989  GCTCTCCAACAACACTTCTCTGGGAGTCTAAA  2020



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5