BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908221
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superf... 412 8e-115
AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 399 6e-111
AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superf... 355 1e-97
AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein ... 54.7 5e-07
> AT1G66852.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24938500-24938832 REVERSE LENGTH=333
Length=333
Score = 412 bits (223), Expect = 8e-115
Identities = 303/340 (89%), Gaps = 11/340 (3%)
Strand=Plus/Plus
Query 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60
|||||| ||||||| ||||||| || ||| | |||||||||||||||||||| |||||
Sbjct 1 ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCAT 60
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGCA-GCTACACAACTACAAGC 119
||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||
Sbjct 61 GTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAG-TACACTACTACAAGC 119
Query 120 TAATATTGATTGGGCATGTAGTGTAGGAAACA-TTGATTGTGTAATCATCAATCCTGGTG 178
||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||
Sbjct 120 TAATATTGATTGGGCATGTAGTGAAGGAAA-AGTTGATTGTGTAATGATCAATCCTGGTG 178
Query 179 GACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTT-GTGATGAATGATTAC 237
||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||| |
Sbjct 179 GACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATC-GTTTGTGATGAATGATTTC 237
Query 238 TACCAGAC-TCACGGGAGCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCGT 296
|| ||| ||||||||||||||||||| |||| |||||||||||| |||||| ||||
Sbjct 238 TAT-AGAAATCACGGGAGCACTGAAGAG---TGTAATTTTAGTGGTACCGGTCAAGTCGT 293
Query 297 TAGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336
|| | |||||||||||||||||||||||| ||||||||||
Sbjct 294 TACTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG 333
> AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24945484-24946968 REVERSE LENGTH=1485
Length=1485
Score = 399 bits (216), Expect = 6e-111
Identities = 299/339 (88%), Gaps = 6/339 (2%)
Strand=Plus/Plus
Query 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60
|||||| ||||||| ||| | |||||||| | |||||||||||||||||||| ||||||
Sbjct 1092 ATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCGTTGTAATCCACCCTCTTCAT 1151
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGC-AGCTACACAACTACAAGC 119
||||||||||| ||||||||||||||||| ||||||||| || ||||||| |||||||
Sbjct 1152 GTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGGCAAG-TACACAATTACAAGC 1210
Query 120 TAATATTGATTGGGCATGTAGTGTAGGAAACA-TTGATTGTGTAATCA-TCAATCCTGGT 177
||||||||||||||||||||||| |||||| | ||||||||| || || |||||||||||
Sbjct 1211 TAATATTGATTGGGCATGTAGTGAAGGAAA-AGTTGATTGTGCAA-CAATCAATCCTGGT 1268
Query 178 GGACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTTGTGATGAATGATTAC 237
||| ||||||||||||| ||||| || ||| ||||||||| ||||||||||||||| |
Sbjct 1269 GGATCTTGCTTTGATCCGGATACTCTTGTTAGTCATGCATCATTTGTGATGAATGATTTC 1328
Query 238 TACCAGACTCACGGGAGCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCGTT 297
||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1329 TACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTACTGGTACTGGTCAAGTCGTT 1388
Query 298 AGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336
| || |||||||||||||||| |||||| |||||| |||
Sbjct 1389 ACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG 1427
> AT4G16165.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:9164080-9164633 FORWARD LENGTH=554
Length=554
Score = 355 bits (192), Expect = 1e-97
Identities = 294/342 (86%), Gaps = 12/342 (4%)
Strand=Plus/Plus
Query 1 ATGTTTTCGCAATTAACACTAATATTCCTTCTGTCTCTCGTTGTAATCCACCCCCTTCAT 60
|||||| ||||||| |||||||| |||||||| |||||| ||||||| ||||| |||||
Sbjct 88 ATGTTTCCGCAATTGACACTAATTTTCCTTCTCTCTCTCACTGTAATCTACCCCTTTCAT 147
Query 61 GTCTCGGCCAAGACATGGTGTGTGGCAAACCCATCGGCGGCA-GCTACACAACTACAAGC 119
||||||||||||||||||||||| ||||||||||| || ||| | ||||||| |||||||
Sbjct 148 GTCTCGGCCAAGACATGGTGTGTAGCAAACCCATCAGCCGCAAG-TACACAATTACAAGC 206
Query 120 TAATATTGATTGGGC-ATGTAGTGTAGGAAA-CATTGATTGTGTAATCATCAATCCTGGT 177
||||||||||||| | ||||||| |||||| | | | ||||||| | ||| |||||||
Sbjct 207 TAATATTGATTGG-CTATGTAGTCAAGGAAATCCTGG-TTGTGTATTAATCGGTCCTGGT 264
Query 178 GGACCTTGCTTTGATCCAAATACTGTTATTAACCATGCATCAGTTGTGATGAATGATTAC 237
||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 265 GGATCTTGCTTTGAACCAAATAATGTTATTAACCATGCATCATTTGTGATGAATGATTAC 324
Query 238 TACCAGACT-CACGGGA-GCACTGAAGAGGCGTGTAGTTTTAGTGGTACTGGTCAAATCG 295
|||||| | || |||| |||||||||||||||||| |||||||||| |||||| ||||
Sbjct 325 TACCAGT-TGCA-GGGAAGCACTGAAGAGGCGTGTAATTTTAGTGGTTCTGGTCGAATCA 382
Query 296 TT-AGTGTTGATCCAAGTTATGGTGGTTGTGCGTATACGTAG 336
|| | | | |||||||||||| | |||||| |||| |||||
Sbjct 383 TTGA-TACTAATCCAAGTTATGCTCGTTGTGTGTATTCGTAG 423
> AT2G39640.1 | Symbols: | glycosyl hydrolase family 17 protein
| chr2:16525086-16527012 REVERSE LENGTH=1735
Length=1735
Score = 54.7 bits (29), Expect = 5e-07
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 106 ACACAACTACAAGCTAATATTGATTGGGCATGTAG 140
|||||||||||||||||||||||||||| |||||
Sbjct 1408 ACACAACTACAAGCTAATATTGATTGGGTGTGTAG 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15683537688
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5