BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908230
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 542 2e-153
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 542 bits (293), Expect = 2e-153
Identities = 519/626 (83%), Gaps = 23/626 (4%)
Strand=Plus/Plus
Query 103 GCTCAGTTTCAGTGCGGGAACATCACCGCCGGTTTCCCCTTCTGGGGAGGGAAACGT-CA 161
||| |||||||||| |||||||||||||| |||||||| |||| || ||||| ||| |
Sbjct 1240 GCTAAGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCT 1299
Query 162 CAAAGATTGCGGCCATCCATTGCTGGAACTTCGCTGCCCTAACAACATCACCTCCT-TAA 220
|||| |||||| ||||||| | |||| |||| |||| ||||||||| ||| || |||
Sbjct 1300 CAAA-TTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAACATGGCCT-CTATAA 1357
Query 221 CCATCTCAAACCATC-TGTACCATGTTCTCCATATAGATCAAACGTCTAAGACTCTTAAA 279
||||||| |||| | | ||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct 1358 TCATCTCAGACCA-CTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGA 1416
Query 280 CTTTCCAGTTCAGAGTTACAAGGTTCATTTTGCAACTCTACATT-CACAGGCACAACCTT 338
||| | || ||||| | ||||||| ||||||||| |||| || ||||| |||||||||
Sbjct 1417 CTTGCTAGAGCAGAGCTGGAAGGTTCTTTTTGCAACGCTAC-TTACACAGCCACAACCTT 1475
Query 339 GCCTCCCCAAATCTTTGAGCTTTCACCGACCTTCAAGAACCTCACTGTTTTCTACCTCTG 398
|||| || ||||||||||| ||||| | |||| ||||| |||||||||||||||||||||
Sbjct 1476 GCCTTCCAAAATCTTTGAGATTTCATCAACCTACAAGAGCCTCACTGTTTTCTACCTCTG 1535
Query 399 CGACCCTAAGCGTT-CTTACCATTCAAGTTATACATGTCCTGGTTGGGGTCCTA-TCTCA 456
|||||||||| ||| |||||| ||| |||||||||||||||||| | || ||| |||||
Sbjct 1536 CGACCCTAAG-GTTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGG-CCTTGTCTCA 1593
Query 457 GTTTCTGAAAAC-CTTGATTATCATAAGTCCTGCCTTGACAGTTTCACGATTAACGTTCC 515
|| ||| |||| || ||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 1594 GTGTCTCAAAATTCT-GATTACCATAACTCCTGCCAAGACAGTTTCACGATTAACGTTCC 1652
Query 516 TAAGAGCTTTGTTCCAGAAGAGAAAGAGTTAAATTTAACACA-TATAGAAAGTGCTTTAA 574
||||||||||||||||||||||||||||| || | || || | | |||||||||||||
Sbjct 1653 AAAGAGCTTTGTTCCAGAAGAGAAAGAGTTGGATGTGAC-CAATTTGGAAAGTGCTTTAA 1711
Query 575 GAGAAGGGTTTGAGGTAAAGATGAAGATTGAGGAGAAAGCGTGTCAAGACTGTTCATC-T 633
||||||| |||||||| ||| | ||| |||| |||||| | |||||| | ||| |||| |
Sbjct 1712 GAGAAGGATTTGAGGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCT 1771
Query 634 CA--TGAAATCTGCGGCTTC-AACAATACCACACAGGTTTGCTGCAAAGAAGCCTCATCA 690
| || || |||||||||| || ||| | |||||| |||||||||| ||||||||||||
Sbjct 1772 CTGGTGGAACCTGCGGCTTCCAA-AATTCAACACAGATTTGCTGCAAGGAAGCCTCATCA 1830
Query 691 TCAGCATGCAACTCAC-TCCATCCAC 715
| || |||||| | | |||||||||
Sbjct 1831 TTAGGATGCAA-TAAAGTCCATCCAC 1855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5