BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908232
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 340 1e-92
AT1G66940.1 | Symbols: | protein kinase-related | chr1:2497302... 255 4e-67
AT1G66920.2 | Symbols: | Protein kinase superfamily protein | ... 246 2e-64
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 340 bits (184), Expect = 1e-92
Identities = 236/260 (91%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 113 AGTTTCAGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCCGGTGGGATTCGTCCCCAAA 172
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 1244 AGTTTCAGTGTGGGAACATCACCGCTGGTTTCCCTTTCTCCGGTGGGAATCGTCCTCAAA 1303
Query 173 TTTGCGGTCATCCATCGCTAGAGCTTCACTGCTTTAACAACCAT-ACCTCTATAATCATC 231
||||||||||||||||| | ||||||||||||| |||||| ||| ||||||||||||||
Sbjct 1304 TTTGCGGTCATCCATCGTTGGAGCTTCACTGCTATAACAA-CATGGCCTCTATAATCATC 1362
Query 232 TCAGACCATC-TTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTCGC 290
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1363 TCAGACCA-CTTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTTGC 1421
Query 291 TAGAGCAGAGCTTCAAGGTTCATTTTT-CAACGCTTCATT-CACAGCCACAACCTTACCT 348
|||||||||||| ||||||| ||||| ||||||| | || ||||||||||||||| |||
Sbjct 1422 TAGAGCAGAGCTGGAAGGTTC-TTTTTGCAACGCTAC-TTACACAGCCACAACCTTGCCT 1479
Query 349 TACGAAATCTTTGAGCTTTC 368
| | ||||||||||| ||||
Sbjct 1480 TCCAAAATCTTTGAGATTTC 1499
Score = 311 bits (168), Expect = 8e-84
Identities = 266/313 (85%), Gaps = 7/313 (2%)
Strand=Plus/Plus
Query 365 TTTCTTACCGTTCAAGTTATACATGTCCTGATAGTGGCCTTGTCTCAGTGTCTCAAAACC 424
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1547 TTTCTTACCGTTCGAGTTATACATGTCCTGGTAGAGGCCTTGTCTCAGTGTCTCAAAA-T 1605
Query 425 T-TGATTATCATGATTCATG-CAATGGTAGTTTCACGATTAACGCCCCAAAGAGCTTTGT 482
| |||||| ||| | || || ||| | |||||||||||||||| ||||||||||||||
Sbjct 1606 TCTGATTACCATAACTCCTGCCAA-GACAGTTTCACGATTAACGTTCCAAAGAGCTTTGT 1664
Query 483 TCCAGAAGAGAAAGAGTTGAACATGAGCAATTTGGAAAGTGCTTTAAGAGAAGGGTTTGA 542
||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 1665 TCCAGAAGAGAAAGAGTTGGATGTGACCAATTTGGAAAGTGCTTTAAGAGAAGGATTTGA 1724
Query 543 GGTAAAGGTGAAGACCGATGAGAAAGCGTGTCAAAAATGTTCATCCTCTCAAGGAATCTG 602
||| ||||| ||| ||||||||| | |||||||||||| |||||||| |||| |||
Sbjct 1725 GGTGAAGGTAAAGGTTGATGAGAAAACTTGTCAAAAATGTACATCCTCTGGTGGAACCTG 1784
Query 603 TGGCTTCGAAAATACCACCCA-AGTTTGCTGCAAGGAATCCTCATCATCAGTATGCGATA 661
|||||| ||||| | || || | |||||||||||||| ||||||||| || |||| |||
Sbjct 1785 CGGCTTCCAAAATTCAACACAGA-TTTGCTGCAAGGAAGCCTCATCATTAGGATGCAATA 1843
Query 662 CACTCCATGCCAC 674
| ||||| ||||
Sbjct 1844 AAGTCCAT-CCAC 1855
> AT1G66940.1 | Symbols: | protein kinase-related | chr1:24973028-24974791
REVERSE LENGTH=1279
Length=1279
Score = 255 bits (138), Expect = 4e-67
Identities = 302/378 (80%), Gaps = 23/378 (6%)
Strand=Plus/Plus
Query 1 ATGTACCA-CCTCCCAActtcttgtctgttcttcttcttcttccccttcttctCCTTATT 59
||||| || | |||| |||||||||| | || | ||||| || || ||||||||||
Sbjct 108 ATGTATCATCTTCCC-ACTTCTTGTC--TAGTT-ATATTCTT--CC-TCCTCTCCTTATT 160
Query 60 TCACCATTTTCCTCATGTTTCAAGTAAACAAGAACTTGGTTGGTGTGA-ATCTCAGTTTC 118
||||| | ||||| || ||||||||| |||| |||||| |||||||| | || |||||
Sbjct 161 TCACCCTCTTCCTTGTGATTCAAGTAATCAAGGACTTGGCTGGTGTGAGA-CTTTGTTTC 219
Query 119 AGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCCGGTGGGATTCGTCCCCAA-ATTTGC 177
|||| ||||||||||||||||||||||||||||| ||||||| ||||| || | | ||
Sbjct 220 AGTGCGGAAACATCACCGCTGGTTTCCCCTTCTCGGGTGGGAATCGTCATAAAGAAT-GC 278
Query 178 GGTCATCCATCGCTAGAGCTTCACTGCTTTAACAAC--CAT-ACCTCTATAATCATCTCA 234
|||||||||||||| |||||||||||| || ||| ||| |||||| || ||||||||
Sbjct 279 GGTCATCCATCGCTGGAGCTTCACTGCAACAAAAACAACATCACCTCTTTATTCATCTCA 338
Query 235 GACCATCTTTACAATGTTCTCCATATAGATCAAACATCTAACACTCTTAGACTCGCTAGA 294
|||| ||| |||||||| |||||||||||||||||||||||||| ||| || | |
Sbjct 339 AACCAAAAGTACTCTGTTCTCCGTATAGATCAAACATCTAACACTCTTACACTTGCCAAA 398
Query 295 GCAGAGC-TTCAAGGTTCATTTTT-CAACGCT-TCATTCACAGCCACAACCTTACCTTAC 351
|||| | ||| |||||| ||||| | | || | ||||||| ||||||||| ||| |
Sbjct 399 -CAGAACCTTCTAGGTTC-TTTTTGCTCCTCTGT-ATTCACAAACACAACCTTGCCTCCC 455
Query 352 GAAATCTTT-GAGCTTTC 368
|||| |||| ||||||||
Sbjct 456 GAAA-CTTTCGAGCTTTC 472
> AT1G66920.2 | Symbols: | Protein kinase superfamily protein
| chr1:24965304-24967522 REVERSE LENGTH=2050
Length=2050
Score = 246 bits (133), Expect = 2e-64
Identities = 228/273 (84%), Gaps = 9/273 (3%)
Strand=Plus/Plus
Query 35 tcttcttccccttcttctCCTTATTTCACCATTTTCCTCATGTTTCAAGTAAACAAGA-A 93
|||| |||| ||||||||| |||||| ||||| ||||| || ||||||||||||| | |
Sbjct 119 TCTTGTTCCTCTTCTTCTCTTTATTTTACCATCTTCCTTGTGCTTCAAGTAAACAA-ACA 177
Query 94 CTTGGTTGGTGTGAATCTCAGTTTCAGTGTGGAAACATCACCGCTGGTTTCCCCTTCTCC 153
||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 178 CTTGGATGGTGCGAATCTCAGTTTCAGTGTGGAAACATCACTGCCGGTTTTCCCTTCTGG 237
Query 154 GGTGGGATTCGTCCCCAAATTTGCGGTCATCCATCGCTAGAGCTTCACTGCTTTAACAAC 213
|| |||| ||||||| || ||||||||||||||| ||| |||||||||||| || | |||
Sbjct 238 GGAGGGAATCGTCCCGAAGTTTGCGGTCATCCATTGCTGGAGCTTCACTGCCTTGATAAC 297
Query 214 CAT-ACCTCTATAATCATCTCAGACCATCTT-TACAATGTTCTCCA-TATAGATCAAACA 270
|| |||||| ||| ||||||||||||| || ||| ||||||| | |||| |||| |||
Sbjct 298 -ATCACCTCTTTAACCATCTCAGACCAT-TTGTACCATGTTCTT-AGTATAAATCATACA 354
Query 271 TCTAACACTCTTAGACTCGCTAGAGCAGAGCTT 303
| ||||||||| ||| | || ||| |||| |||
Sbjct 355 TATAACACTCTAAGAGTTGCCAGAACAGA-CTT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5