BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908241
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 856 0.0
AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 852 0.0
> AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54300.1);
Has 105 Blast hits to 105 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710013-1712165
REVERSE LENGTH=1548
Length=1548
Score = 856 bits (463), Expect = 0.0
Identities = 642/726 (88%), Gaps = 21/726 (3%)
Strand=Plus/Plus
Query 17 CACGTCTAAACTTGCCTCTAACAACGACTCCGGAGCTTATAAACAAGATTGAAACTTACC 76
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||
Sbjct 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130
Query 77 TCAATAG-AAACTACACATGTCCTCATCAACAAATAGAGAA--C-TCAGAGACCTCAACT 132
|||| || | |||||||||||||||||||||||| |||||| | ||| |||| ||||||
Sbjct 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189
Query 133 CTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCAATGATCAAAATT 192
|||| ||| | |||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATCAAGATT 249
Query 193 GG-AACATG-GACCCCCGTTG-CAATAAACCCTGAAGATATTGTGGCGAAATTCTATTTT 249
|| || || | | ||||| ||| ||||||||| || |||||||| ||||||||||||
Sbjct 250 GGCGAC-TGTG-TCTTCGTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTTT 306
Query 250 GCAAAGAAGAAACTTATATGGGAGTTTCTCTTCGGAGAAGAAGAAACTAACATGCCAAGG 309
||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||
Sbjct 307 GCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAGG 366
Query 310 CTGAAGAGAAAGATTGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTCAT 369
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 367 CTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAAT 426
Query 370 ACTCGTGATGAAACTGGAATCCTCAATATCGAGTTGAGAAAACGTCCAACATTCTTCATA 429
| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 427 TCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCACA 486
Query 430 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATCGCGATTTCACC 489
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 487 GAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCACC 546
Query 490 -GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTGC 547
|| |||||||||| || || ||||||||||||| ||||||||||||||||||||||||
Sbjct 547 GGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTGC 604
Query 548 AAAAGAACTTGGAGAAGCTTCTAACTAATAGCTTCTGGTCCAAACTCTACAACGTCCCTT 607
|||||||||||||||||||||| || | |||||||||||||||||||| || |||||||
Sbjct 605 AAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCTT 664
Query 608 TCCCGGTAGAAGAATCTCTTTGCTTCGATATTGGCTTTGAAAACAACAACTCATCTCACA 667
|||||||| | |||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 665 TCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT-A-A 722
Query 668 ACAGCCACAACCTGACAGTTGGCTTTAATGTCAACTATGGCCATCAGCATCATCATTATT 727
| |||||| | |||||||||||| || |||||| |||||| ||| ||| | | || ||
Sbjct 723 -CGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-TT 778
Query 728 CTCAAG 733
||||||
Sbjct 779 CTCAAG 784
Score = 207 bits (112), Expect = 2e-52
Identities = 217/263 (83%), Gaps = 25/263 (10%)
Strand=Plus/Plus
Query 789 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 848
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926
Query 849 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTCTCAGGTGGTTAAC-A 907
|| ||||| ||||| | ||||||||||||| | |||||||||||||||||| |||| |
Sbjct 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983
Query 908 TGCA--A-A-T-----G------GATTTCACCGGTTCACAGTATCGTAATCAGATGAACC 952
||| | | | | |||| |||||| ||||||| | || ||| ||||||||
Sbjct 984 -GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTATCGGATGAACC 1042
Query 953 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGTTCAGAGTCAAACATATGCT 1011
|||||||||||| ||||||||||| ||| |||| |||| || |||||||| |||||||
Sbjct 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATACTTGAGAGTCAAGCATATGC- 1100
Query 1012 GCAGTAGCTGATACACAAACTAA 1034
|||| ||||||||||||||||
Sbjct 1101 --AGTACCTGATACACAAACTAA 1121
> AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05770.1);
Has 107 Blast hits to 107 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:20270810-20272106
FORWARD LENGTH=1042
Length=1042
Score = 852 bits (461), Expect = 0.0
Identities = 714/828 (86%), Gaps = 50/828 (6%)
Strand=Plus/Plus
Query 163 ATGAATTTCCCAATCTCAATGATCAAAATTGGAACATGGACCCCCGTTG-CAATAAACCC 221
||||||||||||||||| | ||||| ||||| |||| | ||||| ||| ||||||
Sbjct 1 ATGAATTTCCCAATCTCCACGATCAGGATTGGCGGATGGGTCGTCGTTGCCAA-AAACCC 59
Query 222 TGAAGATATTGTGGCGAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 281
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTCTT 119
Query 282 CGGAGAAGAAGAAACTAACATGCCAAGGCTGAAGA-GAAAGATTGAGATTCAATGGAATG 340
||||||| ||| ||||||| || |||||||| | | ||||| ||||||||||||||||
Sbjct 120 CGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAATG 178
Query 341 ATGTCTCATCTTTTGAAGAGAGTATTCA-TACTCGTGATGAAACTGGAATCCTCAATATC 399
|||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |||
Sbjct 179 ATGTCTCATCTTTTGAAGAGAGTATT-AGTTCACGTGATGAAACTGGAATCCTCAAAATC 237
Query 400 GAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 459
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACACT 297
Query 460 CAATGGAAACAATTGGATCGCGATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGACA 518
||||||||||||||||||| ||||||||||| | | ||| ||||||| || |||||||||
Sbjct 298 CAATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGACA 356
Query 519 TACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTCTAACTAATAG 578
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 357 TACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGACAG 416
Query 579 CTTCTGGTCCAAACTCTAC-AACGTCCCTTTCCCGGTAGAAGAATCTCTTTGCTTCGATA 637
|||||||||||||||||| || ||||||||||||||| | ||||||| || ||||||||
Sbjct 417 CTTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGATA 475
Query 638 TTGGCTTTGAAAACAACAACTCATCTCACAACAGCCACAACCTGACAGTTGGCTTTAATG 697
|||||||||||||||| ||||||| ||||||||||| || |||||||||||||| |
Sbjct 476 GTGGCTTTGAAAACAAC---TCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTAACG 532
Query 698 TCAACTATGGCCATCAGCATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTTGGAG 757
||||| |||||| ||| ||||| | || ||||||||||||||||||||||||||| ||||
Sbjct 533 TCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGGGAG 589
Query 758 AAGGAAACTTTAACATAGCACCGCAGTTCAGGGCTAACGGTGGATGGCAAAGAAACTCAT 817
|||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 590 AAGGAAACTTTA-----GCA------T---GG-CTAACGGTGGATGGCAAAGAAACTCAT 634
Query 818 ATAGTCAAGCCAATAGTCTGAATTATAACACTGCTAATGAGTTGCCTCGGA-TGCAAGCT 876
|||||| || ||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 635 ATAGTCCAGTCAATAGTCTGAATTATAACACTGCTAATGAGTT-CTTTGGAATGCAAGCT 693
Query 877 ATTATCACACCATCGTCTCAGGTGGTTAAC-A---T--------GCAAATGGATTTCACC 924
| | ||||||||||||| ||||||||| | | ||||| |||||||||
Sbjct 694 ACC--C-CACCATCGTCTCAAGTGGTTAACGAGCATTATAACACGCAAAACGATTTCACC 750
Query 925 GGTTCACAGTATCGTAATCAGATGAACCAAGACGAGATCC-GAAAGAT 971
|||||||||| | || |||| ||||||||||||||||||| ||| |||
Sbjct 751 GGTTCACAGTTTGGTTATCACATGAACCAAGACGAGATCCAGAA-GAT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5