BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908243
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67000.1 | Symbols: | Protein kinase superfamily protein | ... 1048 0.0
AT1G66940.1 | Symbols: | protein kinase-related | chr1:2497302... 401 6e-111
AT1G66930.1 | Symbols: | Protein kinase superfamily protein | ... 268 6e-71
AT1G66920.2 | Symbols: | Protein kinase superfamily protein | ... 230 3e-59
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 130 3e-29
> AT1G67000.1 | Symbols: | Protein kinase superfamily protein
| chr1:25004109-25007647 REVERSE LENGTH=2830
Length=2830
Score = 1048 bits (567), Expect = 0.0
Identities = 671/722 (93%), Gaps = 4/722 (1%)
Strand=Plus/Plus
Query 4 TACTATCCCCTCAGTTCTTATTCAATCTTGTTCTTCCTCTTCTCCTTATTCTACCATCTT 63
||| || |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 50 TACCATTCCCTCAGTTCTTATTCGATCTTGTTCTTCCTCTTCTCCCTATTCCACCATCTT 109
Query 64 CCTTGTGCTTCAAGTAAACAAGGACTTGGATGGTGTGAGTCTCTGTTTCAGTGTGGGAAC 123
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 110 CCTTGTGCTTCAAGTAACCAAGGACTTGGGTGGTGTGAGTCTCTGTTTCAGTGTGGGAAC 169
Query 124 ATCACTGCTGATTTCCCCTTTTGGGGCGGGAGTCGTCACAAACCTTGCGGTCATCCGTTG 183
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 170 ATCACCGCTGATTTCCCCTTTTGGGGCGGGAATCGTCACAAACCTTGCGGTCATCCGTTG 229
Query 184 CTAGAGCTTCACTGCAACAATAACAACATCACCTCTTTATTCATCTCAAATCAAGAGTTC 243
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 230 CTGGAGCTTCACTGCAACAATAACAATATCACCTCTTTATACATCTCAAATCAAGAGTTC 289
Query 244 TATGTTCGTCA-ACTAAATCAAACTTCTAACATTCTTACGCTTGCTAGATCAGACCTTTT 302
||||||||||| | |||||||||| ||||||| |||||||||||| |||||||||||| |
Sbjct 290 TATGTTCGTCAGA-TAAATCAAACATCTAACACTCTTACGCTTGCCAGATCAGACCTTCT 348
Query 303 AGGTTCTTTTTGCTCCTCCTCTGCATACAATACCACAACCTTGCCTCCCGAAATCTTTGA 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGGTTCTTTTTGCTCCTCCTATGCATACAATACCACAACCTTGCCTCCCGAAATCTTTGA 408
Query 363 GCTTCCCCCAACTTATAAGAGCCTAACCGTTTTATACCACTGTGATCCAAAGCTTTCTTA 422
|||| |||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 409 GCTTTCCCCAACTTACAAGAGCCTAACCGTATTGTACCATTGTGATCCAAAGCTTTCTTA 468
Query 423 CCGCTCGAGTTATACATGTCCTGCTCTAGGTACTTTTTCAGTGTCTCAAAGCCTTGAGTA 482
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 469 CCGCTCGAGTTATACATGTCCTGCTCTAGGTACTTTTTCAATGTCTCAAAGCGTTGATTA 528
Query 483 CCAGTATTCTTGCCAAAA-ATATTTCTCGGTTAATGTTCCAACGAGTTTCAATCCAGAAG 541
||| |||||||||||||| | |||| | ||||| ||||||||||||||| |||||||||
Sbjct 529 CCAATATTCTTGCCAAAACAG-TTTCACAGTTAACGTTCCAACGAGTTTCCATCCAGAAG 587
Query 542 AGAGAGGGTTGAATTTGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGC 601
||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||
Sbjct 588 AGAGAGGGTTGAATTTGACTAATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAGGTGAAGC 647
Query 602 TGGCGATTGATGAGATACCGTGTCAAGAATGTTTATCCACTCGTGGAATCTGTGGTTTCA 661
||| ||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 648 TGGTGATTGATGAAATACCGTGTCAACAATGTTCATCCACTCGTGGAATCTGTAGTTTCA 707
Query 662 ACAGTACCACACAGATTTGCTGTAACGTAACCTCACCATCTGGCGGAGTTACTTGCGTAC 721
|| |||||||||||| ||||||||||| ||||||||| || || ||||||| ||||||||
Sbjct 708 ACGGTACCACACAGAGTTGCTGTAACGCAACCTCACCGTCAGGAGGAGTTAGTTGCGTAC 767
Query 722 CA 723
||
Sbjct 768 CA 769
Score = 403 bits (218), Expect = 2e-111
Identities = 310/353 (88%), Gaps = 11/353 (3%)
Strand=Plus/Plus
Query 739 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTA 798
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1151 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTCACGAGAAACCTGTCCTCTCCTTTA 1210
Query 799 CTTGACACGT-CTAGAGGCCTTCTAAACAACTTTAGGGAAATGTGCAAAAGAAACGTCAG 857
||||||| || |||||||| || | |||||||| ||||||||||||||||||||||||||
Sbjct 1211 CTTGACA-GTTCTAGAGGCGTTTTGAACAACTTGAGGGAAATGTGCAAAAGAAACGTCAG 1269
Query 858 TGTTCCTGCGTCTGGACAAGCGTTATACGATCTGCAGAAAAGTCCAAATCCAGATAATCT 917
||||||||||||||||| ||||||| |||||| |||| ||| ||||||| |||||||||
Sbjct 1270 TGTTCCTGCGTCTGGACCCGCGTTATTCGATCTCCAGACAAGGCCAAATCAAGATAATCT 1329
Query 918 GAAGATGGCTCTTGAACAAGGTTTTACGCTTGAAG-TTA-ACTCAGATTGCCGA-AGGTG 974
||||||||||||||| ||||||||| || || | ||| | |||||||| || |||||
Sbjct 1330 GAAGATGGCTCTTGATCAAGGTTTT-CGGATGTTGATTACA-TCAGATTGT-GAGAGGTG 1386
Query 975 CCTACACTCTTACGATACTTGTGGATATAATCAGACTTCAAGTGAGTTCGTGTGCTATTG 1034
|| | ||| || | ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1387 CCGAGGTTCTGGCGGTGCTTGTGGATATAATCAGACTTCAAGTGGGTTCGGGTGCTATTG 1446
Query 1035 TAAAGATGGTAAATGCAGAAACGA-T--GATGAAGGATTTTTTCGTCGGCATC 1084
|||||||||||||||| || |||| | ||||| |||||||||||||||||||
Sbjct 1447 TAAAGATGGTAAATGCGGATACGAATACGATGATGGATTTTTTCGTCGGCATC 1499
> AT1G66940.1 | Symbols: | protein kinase-related | chr1:24973028-24974791
REVERSE LENGTH=1279
Length=1279
Score = 401 bits (217), Expect = 6e-111
Identities = 501/634 (79%), Gaps = 36/634 (6%)
Strand=Plus/Plus
Query 34 TTCTTCCTCTTCTCCTTA-TTCTACCATCTTCCTTGTGCTTCAAGTAAACAAGGACTTGG 92
||||||||| |||||||| ||| ||| ||||||||||| ||||||||| |||||||||||
Sbjct 141 TTCTTCCTCCTCTCCTTATTTC-ACCCTCTTCCTTGTGATTCAAGTAATCAAGGACTTGG 199
Query 93 ATGGTGTGAGTCTCTGTTTCAGTGTGGGAACATCACTGCTGATTTCCCCTTTTGGGGCGG 152
||||||||| || |||||||||| || |||||||| |||| ||||||||| | ||| ||
Sbjct 200 CTGGTGTGAGACTTTGTTTCAGTGCGGAAACATCACCGCTGGTTTCCCCTTCTCGGGTGG 259
Query 153 GAGTCGTCACAAACCTTGCGGTCATCCGTTGCTAGAGCTTCACTGCAACAATAACAACAT 212
|| |||||| ||| ||||||||||| | ||| ||||||||||||||||| ||||||||
Sbjct 260 GAATCGTCATAAAGAATGCGGTCATCCATCGCTGGAGCTTCACTGCAACAAAAACAACAT 319
Query 213 CACCTCTTTATTCATCTCAAATCAAGAGTTCTATGTTCGTCAACTA-A-ATCAAACTTCT 270
||||||||||||||||||||| ||| ||| || ||||| || || | ||||||| |||
Sbjct 320 CACCTCTTTATTCATCTCAAACCAAAAGTACTCTGTTC-TCCG-TATAGATCAAACATCT 377
Query 271 AACATTCTTACGCTTGCTAGATCAGA-CCTTTTAGGTTCTTTTTGCTCCTCC-TCTGCAT 328
|||| |||||| ||||| | | |||| |||| ||||||||||||||||||| | | ||
Sbjct 378 AACACTCTTACACTTGCCAAA-CAGAACCTTCTAGGTTCTTTTTGCTCCTCTGTATTCA- 435
Query 329 ACAATACCACAACCTTGCCTCCCGAAATCTTT-GAGCTTCCCCCAACTTATAAGAGCCTA 387
||| || ||||||||||||||||||| |||| |||||| | | || || |||||| |
Sbjct 436 -CAA-AC-ACAACCTTGCCTCCCGAAA-CTTTCGAGCTTTCACGGACCTACAAGAGCGTC 491
Query 388 ACCGTTTTATACCACTG-TGATCCAAAGCTTTCTTACCGCTCGAGTTATACATGTCCTGC 446
|| | || ||||| || | || |||| || ||| || || |||||||||||||
Sbjct 492 ACTATATTCTACCAATGCTCCTCTGT-GCTTCCTAACCTTTCTAGCTATACATGTCCTGA 550
Query 447 TCTAGGTACTTTTTCAGTGTCTCAAAGCCTTGAG---TA-CC--AGTA--T-TC-TTGCC 496
||||| | | ||||||||| |||||| ||| || || || | | || || ||
Sbjct 551 GATAGGTCCCATCTCAGTGTCTGAAAGCCCTGAAAAATATCCTGAG-AGCTGTCGTT-CC 608
Query 497 AAAAATATTTCTCGGTTAATGTTCCAACGAGTTTCAATCCAGAAGAGAGAGGGTTGAATT 556
| | || | | || || ||||| ||||||||| || || |||||| || |||||||
Sbjct 609 AG---T-TT-CACCGTGAAGGTTCCCACGAGTTTCGATACAAAAGAGAAAGAGTTGAATG 663
Query 557 TGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGCTGGCGATTGATGAGA 616
|||||||||| ||||||||| |||||||||| ||||| |||| | ||| ||| ||||||
Sbjct 664 TGACCAATTTGGAAAGTGTTTTAAGAAAAGGATTTGAGGTGACGGTGGTGATCAATGAGA 723
Query 617 -TACCGTGTCAAGAATGTTTATCCACTCGTGGAA 649
||| ||||| |||||||||||| ||| |||||
Sbjct 724 ATACA-TGTCAGGAATGTTTATCCTCTCTTGGAA 756
> AT1G66930.1 | Symbols: | Protein kinase superfamily protein
| chr1:24970523-24973069 FORWARD LENGTH=2025
Length=2025
Score = 268 bits (145), Expect = 6e-71
Identities = 173/187 (93%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 551 TGAATTTGACCAATTTAGAAAGTGTTCTAAGAAAAGGTTTTGATGTGAAGCTGGCGATTG 610
||||| ||||| |||| ||||||| |||||||||||||||||| |||||||||| ||| |
Sbjct 2 TGAATCTGACCCATTTGGAAAGTGCTCTAAGAAAAGGTTTTGAAGTGAAGCTGGTGATCG 61
Query 611 ATGAGATACCGTGTCAAGAATGTTTATCCACTCGTGGAATCTGTGGTTTCAACAGTACCA 670
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 62 ATGAGATACCGTGTCAAGAATGTTCATCCAGTCGTGGAATCTGTGGTTTCAACAGTACCA 121
Query 671 CACAGATTTGCTGTAACGTAACCTCACCATCTGGCGGAGTTACTTGCGTACCACAACATC 730
||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 122 CACAGATATGCTGCAACGTAACCTCACTTTCTGGTGGAGTTACTTGCGTACCACAACATC 181
Query 731 AACCTAG 737
|||||||
Sbjct 182 AACCTAG 188
Score = 259 bits (140), Expect = 4e-68
Identities = 201/230 (87%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 739 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTA 798
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 565 GAGCTTGGTTGTGATGAGGGAAGAAGTTACTATGTAACGAGAAACCTCTCATCTCCTTTA 624
Query 799 CTTGACACGTCTAGAGGCCTTCTAAACAACTTTAGGGAAATGTGCAAAAGAAACGTCAGT 858
||||||| || |||||| || |||||||||| || ||||||||||||||||| ||||||
Sbjct 625 CTTGACAGGTTTAGAGGAGTTTTAAACAACTTAAGAGAAATGTGCAAAAGAAAAGTCAGT 684
Query 859 GTTCCTGCGTCTGGACAAGCGTTATACG-ATCTGCAGA-AAAGTCCAAATCCAGATAATC 916
|||||||||||||||| |||||| || | || |||| ||| ||||||| || | ||||
Sbjct 685 GTTCCTGCGTCTGGACCGGCGTTAAACACA-CTTCAGACAAA-TCCAAATTCAAACAATC 742
Query 917 TGAAGATGGCTCTTGAACAAGGTTTT-ACGCTTGAAGTTAACTCAGATTG 965
| ||||||||||||||||| |||||| | |||| ||| ||||||| ||||
Sbjct 743 TAAAGATGGCTCTTGAACATGGTTTTGA-GCTTCAAGATAACTCAAATTG 791
> AT1G66920.2 | Symbols: | Protein kinase superfamily protein
| chr1:24965304-24967522 REVERSE LENGTH=2050
Length=2050
Score = 230 bits (124), Expect = 3e-59
Identities = 248/307 (81%), Gaps = 11/307 (4%)
Strand=Plus/Plus
Query 1 ATGTACTATC-CCCTCAGTTCTTATTCAATCTTGTTCTTCCTCTTCTCCTTATTCTACCA 59
|||||||||| ||| |||||||| || |||||||| || ||||||| ||||| |||||
Sbjct 91 ATGTACTATCTCCC-CAGTTCTTGTTTGGTCTTGTTCCTCTTCTTCTCTTTATTTTACCA 149
Query 60 TCTTCCTTGTGCTTCAAGTAAACAAGGACTTGGATGGTGTGAGTCTCTGTTTCAGTGTGG 119
||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 150 TCTTCCTTGTGCTTCAAGTAAACAAACACTTGGATGGTGCGAATCTCAGTTTCAGTGTGG 209
Query 120 GAACATCACTGCTGATTTCCCCTTTTGGGGCGGGAGTCGTCACAAACCTTGCGGTCATCC 179
||||||||||| | ||| ||||| ||||| |||| ||||| | || ||||||||||||
Sbjct 210 AAACATCACTGCCGGTTTTCCCTTCTGGGGAGGGAATCGTCCCGAAGTTTGCGGTCATCC 269
Query 180 GTTGCTAGAGCTTCACTGCAACAATAACAACATCACCTCTTTATTCATCTCAAATCAAGA 239
||||| |||||||||||| | | | ||||||||||||||| ||||||| | ||
Sbjct 270 ATTGCTGGAGCTTCACTGC--CT-TGATAACATCACCTCTTTAACCATCTCAGACCATTT 326
Query 240 GTTCTATGTTCGTCA--ACTAAATCAAACTTCTAACATTCTTAC-GCTTGCTAGATCAGA 296
|| | |||||| | | | ||||||| || | ||||| ||| | | |||| ||| ||||
Sbjct 327 GTACCATGTTCTT-AGTA-TAAATCATACATATAACACTCTAAGAG-TTGCCAGAACAGA 383
Query 297 CCTTTTA 303
| |||||
Sbjct 384 CTTTTTA 390
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 130 bits (70), Expect = 3e-29
Identities = 231/305 (76%), Gaps = 26/305 (9%)
Strand=Plus/Plus
Query 749 GTGATGAGGGA-AGAAGTTACTATGTGACGAGAAACCTCTCCTCTCCTTTACT---TGAC 804
||||||| || ||||||||||||||||||||||||||||| | |||| ||| |||
Sbjct 2255 GTGATGA-TGATAGAAGTTACTATGTGACGAGAAACCTCTCGTTTCCTCCACTCAGTGAG 2313
Query 805 ACGTCTAGAGG-CCTTCTAAACAACTTTAGGGAAATGT-GCAAAAGAAACGTCAGTGTTC 862
| | || | | |||| || || |||| || || | | || | |||||||||||| |||
Sbjct 2314 A--T-TA-ATGACCTTTTATACGACTTCAGTCAA-TCTTGCGATAGAAACGTCAGTATTC 2368
Query 863 CTGCGTCTGGA-CAA-GCGTTATACGAT-CTGCAGAAAAGTCCAAATC-CAGATAATCTG 918
| || |||||| | | || ||| || || ||||||| | ||| | | | ||||||||
Sbjct 2369 CCGCATCTGGATCGACGC-TTA-AC-ATACTGCAGAGCACTCCGAGTAAC-GATAATCTA 2424
Query 919 AAGATGGCTCTTGAACAAGGTTTT-ACGCTTGAAGTTAACTCA-GATTGCCGAAGGTGCC 976
|||| |||||| ||| | ||||| | ||||||| ||||| || ||||| || | ||||
Sbjct 2425 AAGAAGGCTCTCGAATACGGTTTCGA-GCTTGAACTTAAC-CAAGATTGTCGGACGTGCA 2482
Query 977 TACACTCTTACGATACTTGTGGATATAATCAGACTTCAAGT-GAGTTCGTGTGCTATTGT 1035
|| ||||| | | | |||||||||||| ||| || |||||| || ||||| ||||||| |
Sbjct 2483 TAGACTCTAAGGGTGCTTGTGGATATAGTCAAACCTCAAGTAGA-TTCGTCTGCTATTCT 2541
Query 1036 AAAGA 1040
| |||
Sbjct 2542 ATAGA 2546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5