BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908255
Length=342
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 224 4e-58
> AT5G53440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:21683679-21687970
REVERSE LENGTH=3546
Length=3546
Score = 224 bits (121), Expect = 4e-58
Identities = 148/160 (93%), Gaps = 5/160 (3%)
Strand=Plus/Plus
Query 70 ATCATGGTACTGGAGACAAGCATCAAGATAACAGTGATGATGTTGGCGACAGGCTTCTCA 129
||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||
Sbjct 602 ATCATGGTACTGGAGACAAGCATCACGATAACAGTGATGACGTTGGTGACAGGGTTCTCA 661
Query 130 CTTCTGGAGATGACTACACTAAAGATGAAAA--ATAAGGGGGAGAAAAGCAGAGATAAAT 187
|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 662 CTTCTGGAGATGACTACATTAAAGATGGAAAGCATAAGGGGGAGAAAAGCAGAGATAAAT 721
Query 188 ATCGGGAAGACAAAGAAGAAGA---CATCAAACATAAAGG 224
|||||||||||||||||||||| ||||||||| |||||
Sbjct 722 ATCGGGAAGACAAAGAAGAAGAAGACATCAAACAGAAAGG 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15985144182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5