BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908256
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67100.1 | Symbols: LBD40 | LOB domain-containing protein 40... 1048 0.0
> AT1G67100.1 | Symbols: LBD40 | LOB domain-containing protein
40 | chr1:25053734-25054847 FORWARD LENGTH=957
Length=957
Score = 1048 bits (567), Expect = 0.0
Identities = 657/702 (94%), Gaps = 0/702 (0%)
Strand=Plus/Plus
Query 1 ATGCGTATGAGCTGTAACGGATGTCGAGTTCTTCGAAAAGGCTGCAGTGAAAACTGTAGC 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 68 ATGCGTATGAGTTGTAACGGATGTCGAGTTCTACGAAAAGGCTGCAGTGAAAACTGTAGC 127
Query 61 ATAAGACCTTGTCTTCAATGGATCAAATCCGCTGAATCTCAAGCCAACGCCACCGTCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 ATAAGACCTTGTCTTCAATGGATCAAATCCGCTGAATCTCAAGCCAACGCCACCGTCTTC 187
Query 121 CTCGCCAAGTTCTATGGCCGTGCCGGCCTCATGAACCTCCTCAACACCGGTCCTGACCAC 180
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 188 CTCGCCAAGTTTTATGGCCGTGCGGGGCTCATGAACCTCCTCAACACCGGTCCTGACCAC 247
Query 181 CTCCGTCCTGGGATATTTAGGTCATTGTTGTACGAAGCATGCGGGAGGATTGTGAACCCG 240
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 248 CTCCGTCCTGCGATATTTAGATCATTGTTGTACGAAGCATGCGGGAGGATTGTGAATCCG 307
Query 241 ATATATGGATCAGTCGGTTTATTGTGGTCCGGGAATTGGCATCTTTGTCAAGCTGCGGTC 300
||||| ||||| || || ||||||||||| || || ||||||||||||||||| || ||
Sbjct 308 ATATACGGATCCGTGGGGTTATTGTGGTCAGGAAACTGGCATCTTTGTCAAGCGGCCGTT 367
Query 301 GAGGCCGTGATGAGAGGCTCACCGGTGACTCCGATCGCATGCGACGCGGCGGTTACTGGT 360
||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 368 GAGGCAGTAATGAGAGGCTCACCCGTGACTCCGATCGCATGCGACGCAGCGGTTACTGGT 427
Query 361 CAAGCTCCTCCTTTTAATAACAAGCTCTGTGACATAAGACACGTGTCAAGCAAGGAAGAG 420
||||| ||||||||||| |||||||| || |||||||||||||||||||||| ||| |||
Sbjct 428 CAAGCACCTCCTTTTAACAACAAGCTTTGCGACATAAGACACGTGTCAAGCAGGGACGAG 487
Query 421 AACGTGAAGAGACGGAGCCGTGGTGCATGCAAGGAAGAGAGAAACGTGAGGTCGTTGAGT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 488 AACGTTAAGAGACGGAGCCGTGGTGCATGCAAGGAAGAGAGAAACGTGAGGTCTTTGAGT 547
Query 481 CATGAGTCGTCACTGAGCCACGAGTCACCGGTGTCGTCTGAAGAGACGACGACGGAGGAA 540
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 548 CATGAGTCGTCACTGAGTCACGAGTCACCGGTGTCTTCTGAGGAGACGACGACGGAGGAA 607
Query 541 CCAAAGAGTTGGATCGGGCTTGAGCTAACTTTGGGGTTGGAGCCTGTATCACGTGGGAGT 600
||||||| |||||||||||||||||| |||||||||||||||||| || ||||||| | |
Sbjct 608 CCAAAGACTTGGATCGGGCTTGAGCTGACTTTGGGGTTGGAGCCTTTAGCACGTGGAAAT 667
Query 601 CACGTGGTTGTGCCGATGAAGAAAAGAAAGTTGGAGAAGTGTGGCACGTCTGAGGATGAG 660
|||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 668 CACGTGGTGGTACCGATGAAGAAAAGAAAGTTAGAGAGGTGTGGCACGTCTGAGGATGAG 727
Query 661 GACACGTGTAAGATTGAGCTAGGACTCGTGTGCAGTGAGTGA 702
|||||||||||||||||||| ||||| |||||||||||||||
Sbjct 728 GACACGTGTAAGATTGAGCTTGGACTGGTGTGCAGTGAGTGA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5