BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908261

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00300.1 | Symbols: YCF9 | YCF9 | chrC:35751-35939 FORWARD L...   279    5e-75


> ATCG00300.1 | Symbols: YCF9 | YCF9 | chrC:35751-35939 FORWARD 
LENGTH=189
Length=189

 Score =  279 bits (151),  Expect = 5e-75
 Identities = 167/174 (96%), Gaps = 4/174 (2%)
 Strand=Plus/Plus

Query  43   ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTA-TG  101
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG  60

Query  102  CATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGA--AACAAAAATGTTGT  159
             |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  61   -ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGT  119

Query  160  TTTTTCTTGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA  213
             |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  ATTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA  173



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9500604561


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5