BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg908287 Length=1440 Score E Sequences producing significant alignments: (Bits) Value AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-... 1507 0.0 AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 259 5e-68 AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 180 4e-44 > AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-25247139 FORWARD LENGTH=1440 Length=1440 Score = 1507 bits (816), Expect = 0.0 Identities = 1254/1462 (86%), Gaps = 44/1462 (3%) Strand=Plus/Plus Query 1 ATGAGTCTCTTCCCTCTCTCAATTCTCGGAACCTCTCAACTTCACCATCAACTCAAATCG 60 ||||||| |||||||||||||||||| ||||||||||| ||||||||| | |||||| Sbjct 1 ATGAGTCAATTCCCTCTCTCAATTCTCAAAACCTCTCAACCTCACCATCAGCCCAAATCC 60 Query 61 ATGAACGCACCACTATCGTCGGATGCAAGAGGCAAAGGTATCCTCATTGAT----TCGAT 116 ||||||||||||| ||| |||||||||||||||||| |||||||||| ||| |||| Sbjct 61 ATGAACGCACCACGATCATCGGATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGA- 119 Query 117 CGACCGAATCAGTAAACTCCCCGACGACGTGTTGGTCAAGATCCTAGCAAGTACGTCCAC 176 |||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct 120 CGACCGGATCAGTAAACTCCCCGACGATGTGTTGGTCATGATCCTAGCAAGTTTGTCCAC 179 Query 177 AGAAGATGCTGTCAAGACAGGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 236 ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 180 TGAAGATGCTTTGAAGACAAGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 239 Query 237 GCCTTACCTCCACTTTGATATGCTAATTGCTACCTTGAACAAGAGGGGACCTCTGGATCC 296 ||||||||||||||| ||| |||||| |||||| | | | |||| |||| | | | | | Sbjct 240 GCCTTACCTCCACTTCGATTTGCTAAGTGCTACAT--A-CGAGAGTGGACTTATCGCTGC 296 Query 297 TCTTTCTAATCA-TGTTGCGAAATCGATAACCGAGGTTATAAAAAATCACAATGGTCATC 355 |||||| ||| | ||||||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 297 TCTTTCCAAT-AGTGTTGCGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATT 355 Query 356 TGATGGGTTGCTCAATCGATCATTTCGCACACCA--GTGTCAAGACGGTGAGCTCGAAAC 413 ||||||||||||||||| |||||||||||||||| |||| || |||||| ||| |||| Sbjct 356 TGATGGGTTGCTCAATCCATCATTTCGCACACCATTGTGT-AA-ACGGTGTGCTTGAAAA 413 Query 414 TTGGATTCAATTACTTACTCTTCAGAAACATACCAAAGCCCTCTCACTTTTTAACCTTCA 473 |||||||| ||| ||||||||| ||||| |||| | | |||||||||| |||| | Sbjct 414 TTGGATTCGATTGCTTACTCTTGAGAAAAATACTAGATTTCTCTCACTTTGTAACAAAC- 472 Query 474 TGTTCATGGTAACGGTAAGAGACCCAACGTCCTTCAATTGTCCCCAAACACATTCTCCCA 533 | | ||||| |||| |||| |||| || |||| || ||||| ||||| ||||| || Sbjct 473 T-T----GGTAAAGGTAGGAGAACCAATGTGCTTCGGTTTTCCCCTAACACTTTCTCGCA 527 Query 534 TCCAA-GCCTCTCAACACTCTTCCTACATGGATACAATTTAGAAACCCCACATGCCTTCA 592 ||||| || || |||| |||||||||| | ||||| |||||| |||| |||||||||||| Sbjct 528 TCCAAAGC-TCGCAACCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCA 586 Query 593 ACGAGTGT-AATAATCTCAAGATTCTCAAACTTGAGAGAATCTTTGCTGAGGTTGATGTG 651 | |||||| || ||||| ||||||||||| |||||| ||||||| ||||| ||||||||| Sbjct 587 AGGAGTGTGAA-AATCTGAAGATTCTCAAGCTTGAGGGAATCTTAGCTGAAGTTGATGTG 645 Query 652 TTCAACACAGTTATTGCATCGTGCCCTTCTCTCAAGGTGCTGGTGCTAAAT-GCCATGTG 710 |||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||| Sbjct 646 TTCAACACAGTTATTGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAATTGC-ATGTG 704 Query 711 GTACAACGATAAGGCTTGCTTGAAGATTCATAACAACAACCTTAAGGTCTTGCATTTGGA 770 ||||||||| ||| | ||| ||||||||||||| || || || ||||||||||||||||| Sbjct 705 GTACAACGAAAAGACCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGA 764 Query 771 TT-CCTGTAATGTAGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCGTTT 829 || || | |||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 765 TTGCCC-TCATGTTGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTT 823 Query 830 ACTACTATATGTTTGATA-GGAAGTATAACTTCGTCATCAATGCACCAAGAATTTTGTTT 888 ||||| | ||||| || |||| | ||||| |||||||| ||||||||| |||||||| Sbjct 824 TCTACTTTGCGTTTGCTAAGGAACAA-AACTTTGTCATCAAGGCACCAAGACTTTTGTTT 882 Query 889 AA-AAGCTGGACTCAGGA-CTCGAGGAGAGTGCCATTCATGAACTACAACATTACATCTC 946 || || |||||| | || || ||| | ||||||| |||||||||||| |||||||||| Sbjct 883 AATAAT-TGGACTAAAGATCTAGAGAA-AGTGCCAAACATGAACTACAATATTACATCTC 940 Query 947 ATGCTCAGGAGAAAGAAAATCTTGGACATGAGTTCGTGGTGAGTGGAGATGCTAACTATT 1006 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 941 ATGCTCAGGAGAAAAAAAATATTGGACATGAGTTCGTGGTGAGTGGAGATGCTAGCTACT 1000 Query 1007 TTCAGCAGCTCAAGTCTTTGAAGGTGGTCATAGATGTAATGAATTCGAGAGAGGTTGAAA 1066 | || |||| |||||||||||||||||| | ||||||| ||||||||||| || | | Sbjct 1001 TGCAAAAGCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACA 1060 Query 1067 TGTTGAGGGATATTTTAGTAGCGTGGCATGGAATAATGGAAGAGCTCGATATAATATTTA 1126 || | ||||| |||||||| || ||| ||||| || ||||||||||| ||||| |||||| Sbjct 1061 TGCTAAGGGACATTTTAGTTGCTTGGAATGGAGTATTGGAAGAGCTCCATATACTATTTA 1120 Query 1127 AGGATAACAATGTC--T--CT--AAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAA 1180 |||||||||||||| | || |||||||| |||||||||| || ||||||||||||| Sbjct 1121 AGGATAACAATGTCCCTAACTCTAAGGAAGATAGTGAATCTTCGATTGGTGGAACACAAA 1180 Query 1181 AGAAAAAGTGGGAGGAGACAAAACTTTTTCCCAATGCTGATTT-CGGCGTGGAAGTTTTG 1239 ||||||||||||||||| |||| || ||||||||||||||||| || ||||||||| || Sbjct 1181 AGAAAAAGTGGGAGGAGGCAAATCTGTTTCCCAATGCTGATTTTCGT-GTGGAAGTTATG 1239 Query 1240 TGGATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTA 1299 |||||| || |||||| ||| || ||||| ||||| |||||||||||||||||||||||| Sbjct 1240 TGGATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTA 1299 Query 1300 ATGCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTT-GCAAAGGA 1358 | ||||||||| ||||||||||||||||||| || |||||||| |||||| ||||| || Sbjct 1300 ACGCAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTC-ATTTTTTGCAAATGA 1358 Query 1359 GAAGTTAGAGAACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAA 1418 |||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1359 GAAGTTGGATAACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAA 1418 Query 1419 TCTTAGTATTGAATGCTTTTGA 1440 |||||||||||||||||| ||| Sbjct 1419 TCTTAGTATTGAATGCTTCTGA 1440 > AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:14093675-14094277 FORWARD LENGTH=384 Length=384 Score = 259 bits (140), Expect = 5e-68 Identities = 256/312 (82%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 1133 ACAATGTCTCTAAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAAAGAAAAAGTGGG 1192 ||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||| ||||| Sbjct 77 ACAATGTGTATAAGGAAGAAAGTGCATCTTCCATTGGTGGAACACAAAAGAAAATGTGGG 136 Query 1193 AGGAGACAAAACT-TTTTCCCAATGCTG-ATTTCGGCGTGGAAGTTTTGTGGATGGTTAA 1250 |||||| |||||| |||||||||||||| ||||| | ||| ||| | ||| ||| || | Sbjct 137 AGGAGA-AAAACTCTTTTCCCAATGCTGAATTTC-GAGTGAAAGCTGTGTCGATTTTTGA 194 Query 1251 TTTCA-GCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAATGCAAGGGA 1309 ||| | | || | |||||||||||||||||||||||||||||||||| ||| ||| |||| Sbjct 195 TTT-ATGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAAGCATGGGA 253 Query 1310 CAATAATGAAGAAGAT-GATGATCAAGACGTCTTCGATTTTTGCAAAGGAGAAGTTAGAG 1368 | | ||||| || || ||||||| |||||| |||| || | || |||||||| | Sbjct 254 CCGTGATGAACAA-ATTGATGATCGAGACGTTTTCGGTTCCTCCAGTTGAGAAGTTTTAT 312 Query 1369 AACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAATCTTAGTATT 1428 | ||||||||||| |||||||| | |||||||||||||||||| | ||| ||||||||| Sbjct 313 ATTGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTTAGTATT 372 Query 1429 GAATGCTTTTGA 1440 | || ||| ||| Sbjct 373 GGATACTTCTGA 384 > AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35945.1); Has 30 Blast hits to 30 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15340504-15341109 REVERSE LENGTH=369 Length=369 Score = 180 bits (97), Expect = 4e-44 Identities = 166/200 (83%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 1242 GATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAAT 1301 |||| |||||||||| || | |||||||||||||||||||||||||||||||||| ||| Sbjct 171 GATGTTTAATTTCAGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAC 230 Query 1302 GCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTTGCAAAGGAGAA 1361 ||||||||| | ||||| | |||||||||| ||||||||| |||| | || ||||| Sbjct 231 GCAAGGGACCGTGATGAACACGATGATGATCGAGACGTCTTTGATTCCTCCAGTTGAGAA 290 Query 1362 GTTAGAGA-ACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAATC 1420 ||| | | | ||||||||||| || ||||| | ||||||||||||||||||| ||| | Sbjct 291 GTTTTATATA-GAAGCGGCCGTTGCAAAACTGATGGAACTTCCAAAGGGTAATAAGAACC 349 Query 1421 TTAGTATTGAATGCTTTTGA 1440 ||||||||| || ||| ||| Sbjct 350 TTAGTATTGGATACTTCTGA 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70983570630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5