BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908287
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-... 1507 0.0
AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 259 5e-68
AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 180 4e-44
> AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-25247139
FORWARD LENGTH=1440
Length=1440
Score = 1507 bits (816), Expect = 0.0
Identities = 1254/1462 (86%), Gaps = 44/1462 (3%)
Strand=Plus/Plus
Query 1 ATGAGTCTCTTCCCTCTCTCAATTCTCGGAACCTCTCAACTTCACCATCAACTCAAATCG 60
||||||| |||||||||||||||||| ||||||||||| ||||||||| | ||||||
Sbjct 1 ATGAGTCAATTCCCTCTCTCAATTCTCAAAACCTCTCAACCTCACCATCAGCCCAAATCC 60
Query 61 ATGAACGCACCACTATCGTCGGATGCAAGAGGCAAAGGTATCCTCATTGAT----TCGAT 116
||||||||||||| ||| |||||||||||||||||| |||||||||| ||| ||||
Sbjct 61 ATGAACGCACCACGATCATCGGATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGA- 119
Query 117 CGACCGAATCAGTAAACTCCCCGACGACGTGTTGGTCAAGATCCTAGCAAGTACGTCCAC 176
|||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 120 CGACCGGATCAGTAAACTCCCCGACGATGTGTTGGTCATGATCCTAGCAAGTTTGTCCAC 179
Query 177 AGAAGATGCTGTCAAGACAGGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 236
||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAAGATGCTTTGAAGACAAGTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGT 239
Query 237 GCCTTACCTCCACTTTGATATGCTAATTGCTACCTTGAACAAGAGGGGACCTCTGGATCC 296
||||||||||||||| ||| |||||| |||||| | | | |||| |||| | | | | |
Sbjct 240 GCCTTACCTCCACTTCGATTTGCTAAGTGCTACAT--A-CGAGAGTGGACTTATCGCTGC 296
Query 297 TCTTTCTAATCA-TGTTGCGAAATCGATAACCGAGGTTATAAAAAATCACAATGGTCATC 355
|||||| ||| | ||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 297 TCTTTCCAAT-AGTGTTGCGGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATT 355
Query 356 TGATGGGTTGCTCAATCGATCATTTCGCACACCA--GTGTCAAGACGGTGAGCTCGAAAC 413
||||||||||||||||| |||||||||||||||| |||| || |||||| ||| ||||
Sbjct 356 TGATGGGTTGCTCAATCCATCATTTCGCACACCATTGTGT-AA-ACGGTGTGCTTGAAAA 413
Query 414 TTGGATTCAATTACTTACTCTTCAGAAACATACCAAAGCCCTCTCACTTTTTAACCTTCA 473
|||||||| ||| ||||||||| ||||| |||| | | |||||||||| |||| |
Sbjct 414 TTGGATTCGATTGCTTACTCTTGAGAAAAATACTAGATTTCTCTCACTTTGTAACAAAC- 472
Query 474 TGTTCATGGTAACGGTAAGAGACCCAACGTCCTTCAATTGTCCCCAAACACATTCTCCCA 533
| | ||||| |||| |||| |||| || |||| || ||||| ||||| ||||| ||
Sbjct 473 T-T----GGTAAAGGTAGGAGAACCAATGTGCTTCGGTTTTCCCCTAACACTTTCTCGCA 527
Query 534 TCCAA-GCCTCTCAACACTCTTCCTACATGGATACAATTTAGAAACCCCACATGCCTTCA 592
||||| || || |||| |||||||||| | ||||| |||||| |||| ||||||||||||
Sbjct 528 TCCAAAGC-TCGCAACCCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCA 586
Query 593 ACGAGTGT-AATAATCTCAAGATTCTCAAACTTGAGAGAATCTTTGCTGAGGTTGATGTG 651
| |||||| || ||||| ||||||||||| |||||| ||||||| ||||| |||||||||
Sbjct 587 AGGAGTGTGAA-AATCTGAAGATTCTCAAGCTTGAGGGAATCTTAGCTGAAGTTGATGTG 645
Query 652 TTCAACACAGTTATTGCATCGTGCCCTTCTCTCAAGGTGCTGGTGCTAAAT-GCCATGTG 710
|||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||
Sbjct 646 TTCAACACAGTTATTGCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAATTGC-ATGTG 704
Query 711 GTACAACGATAAGGCTTGCTTGAAGATTCATAACAACAACCTTAAGGTCTTGCATTTGGA 770
||||||||| ||| | ||| ||||||||||||| || || || |||||||||||||||||
Sbjct 705 GTACAACGAAAAGACCTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGA 764
Query 771 TT-CCTGTAATGTAGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCGTTT 829
|| || | |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 765 TTGCCC-TCATGTTGATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTT 823
Query 830 ACTACTATATGTTTGATA-GGAAGTATAACTTCGTCATCAATGCACCAAGAATTTTGTTT 888
||||| | ||||| || |||| | ||||| |||||||| ||||||||| ||||||||
Sbjct 824 TCTACTTTGCGTTTGCTAAGGAACAA-AACTTTGTCATCAAGGCACCAAGACTTTTGTTT 882
Query 889 AA-AAGCTGGACTCAGGA-CTCGAGGAGAGTGCCATTCATGAACTACAACATTACATCTC 946
|| || |||||| | || || ||| | ||||||| |||||||||||| ||||||||||
Sbjct 883 AATAAT-TGGACTAAAGATCTAGAGAA-AGTGCCAAACATGAACTACAATATTACATCTC 940
Query 947 ATGCTCAGGAGAAAGAAAATCTTGGACATGAGTTCGTGGTGAGTGGAGATGCTAACTATT 1006
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 941 ATGCTCAGGAGAAAAAAAATATTGGACATGAGTTCGTGGTGAGTGGAGATGCTAGCTACT 1000
Query 1007 TTCAGCAGCTCAAGTCTTTGAAGGTGGTCATAGATGTAATGAATTCGAGAGAGGTTGAAA 1066
| || |||| |||||||||||||||||| | ||||||| ||||||||||| || | |
Sbjct 1001 TGCAAAAGCTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACA 1060
Query 1067 TGTTGAGGGATATTTTAGTAGCGTGGCATGGAATAATGGAAGAGCTCGATATAATATTTA 1126
|| | ||||| |||||||| || ||| ||||| || ||||||||||| ||||| ||||||
Sbjct 1061 TGCTAAGGGACATTTTAGTTGCTTGGAATGGAGTATTGGAAGAGCTCCATATACTATTTA 1120
Query 1127 AGGATAACAATGTC--T--CT--AAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAA 1180
|||||||||||||| | || |||||||| |||||||||| || |||||||||||||
Sbjct 1121 AGGATAACAATGTCCCTAACTCTAAGGAAGATAGTGAATCTTCGATTGGTGGAACACAAA 1180
Query 1181 AGAAAAAGTGGGAGGAGACAAAACTTTTTCCCAATGCTGATTT-CGGCGTGGAAGTTTTG 1239
||||||||||||||||| |||| || ||||||||||||||||| || ||||||||| ||
Sbjct 1181 AGAAAAAGTGGGAGGAGGCAAATCTGTTTCCCAATGCTGATTTTCGT-GTGGAAGTTATG 1239
Query 1240 TGGATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTA 1299
|||||| || |||||| ||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 1240 TGGATGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTA 1299
Query 1300 ATGCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTT-GCAAAGGA 1358
| ||||||||| ||||||||||||||||||| || |||||||| |||||| ||||| ||
Sbjct 1300 ACGCAAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTC-ATTTTTTGCAAATGA 1358
Query 1359 GAAGTTAGAGAACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAA 1418
|||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1359 GAAGTTGGATAACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAA 1418
Query 1419 TCTTAGTATTGAATGCTTTTGA 1440
|||||||||||||||||| |||
Sbjct 1419 TCTTAGTATTGAATGCTTCTGA 1440
> AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G43410.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:14093675-14094277 FORWARD LENGTH=384
Length=384
Score = 259 bits (140), Expect = 5e-68
Identities = 256/312 (82%), Gaps = 8/312 (3%)
Strand=Plus/Plus
Query 1133 ACAATGTCTCTAAGGAAGAGGGTGAATCTTCCATCGGTGGAACACAAAAGAAAAAGTGGG 1192
||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||| |||||
Sbjct 77 ACAATGTGTATAAGGAAGAAAGTGCATCTTCCATTGGTGGAACACAAAAGAAAATGTGGG 136
Query 1193 AGGAGACAAAACT-TTTTCCCAATGCTG-ATTTCGGCGTGGAAGTTTTGTGGATGGTTAA 1250
|||||| |||||| |||||||||||||| ||||| | ||| ||| | ||| ||| || |
Sbjct 137 AGGAGA-AAAACTCTTTTCCCAATGCTGAATTTC-GAGTGAAAGCTGTGTCGATTTTTGA 194
Query 1251 TTTCA-GCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAATGCAAGGGA 1309
||| | | || | |||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 195 TTT-ATGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAAGCATGGGA 253
Query 1310 CAATAATGAAGAAGAT-GATGATCAAGACGTCTTCGATTTTTGCAAAGGAGAAGTTAGAG 1368
| | ||||| || || ||||||| |||||| |||| || | || |||||||| |
Sbjct 254 CCGTGATGAACAA-ATTGATGATCGAGACGTTTTCGGTTCCTCCAGTTGAGAAGTTTTAT 312
Query 1369 AACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAATCTTAGTATT 1428
| ||||||||||| |||||||| | |||||||||||||||||| | ||| |||||||||
Sbjct 313 ATTGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTTAGTATT 372
Query 1429 GAATGCTTTTGA 1440
| || ||| |||
Sbjct 373 GGATACTTCTGA 384
> AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G35945.1);
Has 30 Blast hits to 30 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15340504-15341109
REVERSE LENGTH=369
Length=369
Score = 180 bits (97), Expect = 4e-44
Identities = 166/200 (83%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 1242 GATGGTTAATTTCAGCGGCTCGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTGTAAT 1301
|||| |||||||||| || | |||||||||||||||||||||||||||||||||| |||
Sbjct 171 GATGTTTAATTTCAGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAC 230
Query 1302 GCAAGGGACAATAATGAAGAAGATGATGATCAAGACGTCTTCGATTTTTGCAAAGGAGAA 1361
||||||||| | ||||| | |||||||||| ||||||||| |||| | || |||||
Sbjct 231 GCAAGGGACCGTGATGAACACGATGATGATCGAGACGTCTTTGATTCCTCCAGTTGAGAA 290
Query 1362 GTTAGAGA-ACGAAGCGGCCGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGCGAATC 1420
||| | | | ||||||||||| || ||||| | ||||||||||||||||||| ||| |
Sbjct 291 GTTTTATATA-GAAGCGGCCGTTGCAAAACTGATGGAACTTCCAAAGGGTAATAAGAACC 349
Query 1421 TTAGTATTGAATGCTTTTGA 1440
||||||||| || ||| |||
Sbjct 350 TTAGTATTGGATACTTCTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5