BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908288
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-... 758 0.0
AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 364 1e-99
AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 263 4e-69
> AT1G67390.1 | Symbols: | F-box family protein | chr1:25244690-25247139
FORWARD LENGTH=1440
Length=1440
Score = 758 bits (410), Expect = 0.0
Identities = 1082/1398 (77%), Gaps = 80/1398 (6%)
Strand=Plus/Plus
Query 23 ATGCAAGAGGTAGACGGATCCTTATCGATCC---GGTCGACCGGATTAGTCAACTACCGG 79
|||||||||| | ||| ||||| |||||||| | ||||||||| ||| |||| || |
Sbjct 83 ATGCAAGAGGCAAACGTATCCTCATCGATCCAATCGACGACCGGATCAGTAAACTCCCCG 142
Query 80 ACAATGTGTTGGTCATGATCCTCAAACAA--ATGAT-AACAGAAGATGCCGTCAGGACAA 136
|| ||||||||||||||||||| | ||| || | || |||||||| | | |||||
Sbjct 143 ACGATGTGTTGGTCATGATCCT--AGCAAGTTTG-TCCACTGAAGATGCTTTGAAGACAA 199
Query 137 GTGTCTTGTCTAAACGATGGAAGAGTGTATGGAAGCAAGTGCCTTATCTCTTCTTCGATA 196
|||| ||||||| ||||||||||| ||||||||| ||||||||||| ||| |||||||
Sbjct 200 GTGTGTTGTCTACACGATGGAAGAATGTATGGAAACAAGTGCCTTACCTCCACTTCGATT 259
Query 197 TGC-AATACGCTTTCTTAAGAAACATGGAACCTCTGCCCT-CTCATTCTAATCGTGTTGC 254
||| || || | | || || | ||| || | | | || ||| ||| ||| |||||||
Sbjct 260 TGCTAA-GTGC-TACATACGAGA-GTGG-ACTTAT-CGCTGCTCTTTCCAATAGTGTTGC 314
Query 255 CAAATTGATAACCCAGGTTATAAAGAATCACAATGGTGATCTGGTGAGCTGCAGAATCCA 314
||| |||||||||||||||||| |||||||||||| || || || | ||| ||||||
Sbjct 315 GGAATCGATAACCCAGGTTATAAACAATCACAATGGTCATTTGATGGGTTGCTCAATCCA 374
Query 315 ACACTATT--CACACCAATGT-AAAGACGGCGAGCTGGAAACTTGGATTCAATTACTTAC 371
|| | || ||||||| ||| || |||| | ||| |||| |||||||| ||| |||||
Sbjct 375 TCA-T-TTCGCACACCATTGTGTAA-ACGGTGTGCTTGAAAATTGGATTCGATTGCTTAC 431
Query 372 TCTTCAGAAACAA-ACCAAAGTTCTCGCACTTTCAAACATTCATTGTAGTTACGGCGGTA 430
|||| ||||| || || | | ||||| |||||| |||| | ||| | || |||
Sbjct 432 TCTTGAGAAA-AATACTAGATTTCTCTCACTTTGTAACAAAC-TTG--G-TA--AAGGT- 483
Query 431 AGG-GTGCCAATGTCCTTCGATTGTCCCCAAACACATTT-TCCCATCCGAGGCTCACAAC 488
||| | ||||||| ||||| || ||||| ||||| ||| || ||||| | |||| ||||
Sbjct 484 AGGAGAACCAATGTGCTTCGGTTTTCCCCTAACAC-TTTCTCGCATCCAAAGCTCGCAAC 542
Query 489 ACTCTTCCTACATCGATACGAACTAAAAACCGCAAATGCCTTCAA-GACCTGCCATAATC 547
|||||||||| ||||||||| || ||||||| |||||||||| || || | ||||
Sbjct 543 CCTCTTCCTACGTCGATACGATTTAGTAACCGCACATGCCTTCAAGGA-GTGTGAAAATC 601
Query 548 TCAAGATTCTCAAACTTGA-GAATATGTTTGCTGAGGTTAATGTGTTCAACACAGTTATT 606
| ||||||||||| ||||| | | || || ||||| ||| ||||||||||||||||||||
Sbjct 602 TGAAGATTCTCAAGCTTGAGGGA-ATCTTAGCTGAAGTTGATGTGTTCAACACAGTTATT 660
Query 607 GCATCGTGTCCCTCTCTCAAGGTGCTAGTGCTTCGTCT-CATGTGGTACAATGCAAGGGC 665
||||| ||||| |||||||||||||| ||||| | | |||||||||||| | || | |
Sbjct 661 GCATCATGTCCTTCTCTCAAGGTGCTGGTGCTAAAT-TGCATGTGGTACAACGAAAAGAC 719
Query 666 TTGCTTGAAGATTCATAACAATAATCTAAAGCTCTTGCATGTGGCCT-CCTATTACGTTC 724
||| ||||||||||||| |||||||| ||| |||||||| ||| | || | | |||
Sbjct 720 CTGCCTGAAGATTCATAATAATAATCTGAAGGTCTTGCATTTGGATTGCC-CTCATGTTG 778
Query 725 ATAGCATTGAAGTGTCTGCACCTCTTTTGGATATTTTCTCCATGGACTACATT---TTTG 781
|| ||||||| ||||||||| ||||| |||||||||||||||| |||| || ||||
Sbjct 779 ATTGCATTGACGTGTCTGCAGCTCTTCTGGATATTTTCTCCATTTTCTACTTTGCGTTTG 838
Query 782 ATGGGGAATATAACATCGTCATCAAGTC-CTCAAGACttttttttACTAAAAACTACGGG 840
| |||| | ||| | ||||||||| | | |||||| |||| || ||| || | ||
Sbjct 839 CTAAGGAACAAAACTTTGTCATCAAGGCAC-CAAGAC-TTTTGTT--TAATAA-T--TGG 891
Query 841 GCTATCGACGC-GGAGAGAGTACCAATCCTGAATTACAACATTTCATATAATGCTCGGGA 899
||| || | |||| ||| |||| | |||| ||||| ||| ||| | |||||| |||
Sbjct 892 ACTAAAGA-TCTAGAGAAAGTGCCAAACATGAACTACAATATTACATCTCATGCTCAGGA 950
Query 900 GATGGAAAATCTTGGGCATCACTTCTTGGTAG-GTAGAGATGCTACCTA-TTTCTGGCGG 957
|| ||||| |||| ||| | ||| |||| | || ||||||||| ||| || | |
Sbjct 951 GAAAAAAAATATTGGACATGAGTTCGTGGT-GAGTGGAGATGCTAGCTACTTGC-AAAAG 1008
Query 958 CTTAAATCTTTGGCTGTGGCCGTGGATATAATGAACACGAAAGAACTTGAAATGTTCAGG 1017
||||| |||||| |||| ||||||| ||| || ||| |||| | | ||| | |||
Sbjct 1009 CTTAAGTCTTTGAAGGTGGTCGTGGATGTAACAAATTCGAGAGAAGTCCACATGCTAAGG 1068
Query 1018 CA-AGTTTTAGTTGCATGGAATGGAATAAT-GAAAAGGCTCGATATATTCTTTAAGCATA 1075
| | |||||||||| ||||||||| || | ||| | |||| ||||| | |||||| |||
Sbjct 1069 GACA-TTTTAGTTGCTTGGAATGGAGTATTGGAAGA-GCTCCATATACTATTTAAGGATA 1126
Query 1076 ACTATGT--GT-A---TACGGAAGA-AGGTGAATCTTCCATTGGTGGAACACAAAAGAAA 1128
|| |||| | | || |||||| | |||||||||| |||||||||||||||||||||
Sbjct 1127 ACAATGTCCCTAACTCTAAGGAAGATA-GTGAATCTTCGATTGGTGGAACACAAAAGAAA 1185
Query 1129 AAGTGGGAGAA---AAA-CTTGTTTCCCAATGCTG-TATTCCGAGTGGAAGCTGTGTGGA 1183
||||||||| | ||| || |||||||||||||| | ||| | ||||||| | ||||||
Sbjct 1186 AAGTGGGAGGAGGCAAATCT-GTTTCCCAATGCTGATTTTC-GTGTGGAAGTTATGTGGA 1243
Query 1184 TGTTTAATTTCAGTGGTTTGGATAAGAAACAGTTTGAATTAGCTTCGCGTTTTATAACGC 1243
||||| |||||| |||| |||| ||||| |||| |||||||||||||||| ||||||
Sbjct 1244 TGTTTGATTTCAACGGTTCAAATAAAAAACAATTTGCATTAGCTTCGCGTTTTGTAACGC 1303
Query 1244 AAGGGACCGTAATGAAGAAGATGATGATCAAGACGTCTTCCGTTTCTGCAACCGAAAAGT 1303
||||||| |||||||||||||||||||| || |||||||| ||| ||||| || ||||
Sbjct 1304 AAGGGACGGTAATGAAGAAGATGATGATTAAAACGTCTTCATTTTTTGCAAATGAGAAGT 1363
Query 1304 TTTATATA-GAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTT 1362
| ||| | ||||||| || |||||||| | |||||||||||||||||| ||||| |||
Sbjct 1364 TGGATA-ACGAAGCGGTTGTGGCCAAACTAAAGGAACTTCCAAAGGGTAATGAGAATCTT 1422
Query 1363 AGTATTGGATATTTCTGA 1380
||||||| || ||||||
Sbjct 1423 AGTATTGAATGCTTCTGA 1440
> AT5G35945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G43410.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:14093675-14094277 FORWARD LENGTH=384
Length=384
Score = 364 bits (197), Expect = 1e-99
Identities = 278/316 (88%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 1071 GCATAACTATGTGTATACGGAAGAAGGTGAATCTTCCATTGGTGGAACACAAAAGAAAAA 1130
|||| || ||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 72 GCATGACAATGTGTATAAGGAAGAAAGTGCATCTTCCATTGGTGGAACACAAAAGAAAAT 131
Query 1131 GT--G-GGAGAAAAACT-TGTTTCCCAATGCTGTATTCCGAGTGGAAGCTGTGTGGATGT 1186
|| | ||||||||||| | ||||||||||||| ||| |||||| ||||||||| ||| |
Sbjct 132 GTGGGAGGAGAAAAACTCT-TTTCCCAATGCTGAATTTCGAGTGAAAGCTGTGTCGATTT 190
Query 1187 TTAATTTCA-GTGGTTTGGATAAGAAACAGTTTGAATTAGCTTCGCGTTTTATAACGCAA 1245
|| |||| | |||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct 191 TTGATTT-ATGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAAGCAT 249
Query 1246 GGGACCGTAATGAAGAAGA-TGATGATCAAGACGTCTTCCGTTTCTGCAACCGAAAAGTT 1304
|||||||| ||||| || | |||||||| |||||| ||| ||| || || || |||||
Sbjct 250 GGGACCGTGATGAACAA-ATTGATGATCGAGACGTTTTCGGTTCCTCCAGTTGAGAAGTT 308
Query 1305 TTATATAGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTTAG 1364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTATATTGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACCTTAG 368
Query 1365 TATTGGATATTTCTGA 1380
||||||||| ||||||
Sbjct 369 TATTGGATACTTCTGA 384
> AT3G43410.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G35945.1);
Has 30 Blast hits to 30 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15340504-15341109
REVERSE LENGTH=369
Length=369
Score = 263 bits (142), Expect = 4e-69
Identities = 181/200 (91%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 1182 GATGTTTAATTTCAGTGGTTTGGATAAGAAACAGTTTGAATTAGCTTCGCGTTTTATAAC 1241
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 171 GATGTTTAATTTCAGTGGTTTGAATAAGAAACAGTTTGCATTAGCTTCGCGTTTTATAAC 230
Query 1242 GCAAGGGACCGTAATGAAGAAGATGATGATCAAGACGTCTTCCGTTTC-TGCAACCGAAA 1300
|||||||||||| ||||| | |||||||||| ||||||||| | ||| | || || |
Sbjct 231 GCAAGGGACCGTGATGAACACGATGATGATCGAGACGTCTTT-GATTCCTCCAGTTGAGA 289
Query 1301 AGTTTTATATAGAAGCGGCCGTTGCCAAACTGATGGAACTTCCAAAGGGTAACGAGAACC 1360
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 290 AGTTTTATATAGAAGCGGCCGTTGCAAAACTGATGGAACTTCCAAAGGGTAATAAGAACC 349
Query 1361 TTAGTATTGGATATTTCTGA 1380
||||||||||||| ||||||
Sbjct 350 TTAGTATTGGATACTTCTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5