BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908290
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67400.1 | Symbols: | ELMO/CED-12 family protein | chr1:252... 1430 0.0
AT3G43400.1 | Symbols: | ELMO/CED-12 family protein | chr3:153... 590 1e-167
> AT1G67400.1 | Symbols: | ELMO/CED-12 family protein | chr1:25247988-25250734
REVERSE LENGTH=1027
Length=1027
Score = 1430 bits (774), Expect = 0.0
Identities = 860/903 (95%), Gaps = 0/903 (0%)
Strand=Plus/Plus
Query 13 AACAAGCACGTTCTCTCCGCCAAAACCAGCCGGAGAAAATATCTCATTTCAACGAAGATG 72
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 14 AACAAGCACGTTCTCTCCGCCAAAACCAGCCGGAGAAAATATCTCAGTTCAACGGAGATG 73
Query 73 CGAGTCGTCAGAATTTCATGCGTTGGGACACGTCATCTCTCACCTCCCTCCTCCGCCCGC 132
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 74 CGAGTTGTCAGAATATCATGCGTCGGGACACGTCATCTCTCACCTCCCTCCTCCGTTCGC 133
Query 133 GGTTGCGACGCCCATTCCGACGACGTATCTGCCTCCTCCGCCGGACTGATTAATGCGGAT 192
|||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 134 GGTTGCGAAGCCCACTCCGACGACGTCTCTGCTTCCTCAGCCGGACTAATTAACGCGGAT 193
Query 193 GCAGAGGATGCGAGCTGTAGTAGCACGCCTAGTTGGAGAATCAAGAAAAGCCTAACATGT 252
||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 194 GCAGAAGATGCGAGTTGTAGTAGCACGCCTAGTTGGAGAATCAAGAAGAGTCTAACATGT 253
Query 253 GTTTGCTTTAACCGCAAGAGAGCTTATGAACGCATTTGCTCTAACTTGACACCATTGCAG 312
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 254 GTTTGCTTTAACCGCAAGAGAGCATATGAACGCATTTGCTCTAACTTGACACCATTGCAG 313
Query 313 GAAGAAAGACTGAAGAGGTTGAGGAAGAGAATGAAGAATTACTTTGATGCATCGCGGCCC 372
||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 314 GAAGAAAGACTTAAAAGGTTGAGGAAGAGAATGAAGAATTACTATGATGCATCACGGCCC 373
Query 373 GATCATCAGGATGCATTGAGAGCACTGTGGTCAGCTACGTATCCTGGTGAAAAGCTTCAA 432
||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 374 GATCATCAGGATGCATTAAGAGCACTGTGGTCAGCAACGTATCCTGATGAAAAGCTTCAA 433
Query 433 GATTTGATCTCAGACCAGTGGAAAAATATGGGATGGCAAGGAAAAGATCCATCCACTGAT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GATTTGATCTCAGACCAGTGGAAAAATATGGGATGGCAAGGAAAAGATCCATCCACTGAT 493
Query 493 TTCAGAGGAGCTGGATTCATATCACTGGAGAATCTTCTATTTTTTGCCAAGACATTCTCG 552
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 494 TTCAGAGGAGCTGGATTCATTTCACTGGAGAATCTTCTATTCTTTGCAAAGACTTTCTCG 553
Query 553 ACTTCGTTTCAGCGTCTGTTAAAGAAACAAGGAGGCAAAAGAGCGGCTTGGGAATATCCA 612
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 554 ACTTCGTTTCAGCGTCTGTTGAATAAACAAGGAGGCAAAAGAGCGGCTTGGGAATATCCA 613
Query 613 TTCGCGGTAGCAGGCGTCAACATAACCTTCATGATCATGCAAATGCTCGACCTAGAAGCA 672
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 614 TTCGCTGTAGCGGGCGTCAACATAACCTTCATGATCATGCAAATGCTTGACCTTGAAGCA 673
Query 673 TCAAAGCCTAGGAGTTTTATACGGTTGGTGTTCTTACAAATGCTGTCAGAAAATGAATGG 732
||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 674 TCAAAACCTAGGAGTTTTATACGGTTGGTGTTCTTACAAATGTTGTCAGAAAGCGAATGG 733
Query 733 GCCTTTGATTTGCTTTACTGTGTGGCCTTTGTGGTAATGGACAAGCAATGGCTGGACAAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GCCTTTGATTTGCTTTACTGTGTGGCCTTTGTGGTAATGGACAAGCAATGGCTGGACAAG 793
Query 793 AACGCCACCTACATGGAATTCAACGATGTGCTAAGATCTACAAGGGGTCAGCTTGAGAGA 852
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 794 AACGCCACCTACATGGAATTCAACGATGTGCTAAGATGTACAAGGGGGCAGCTTGAGAGA 853
Query 853 GAGCTGATGATGGATGATGTTTTCAGAATTGAGGATATGCCTTCTTTTTCTCTTCTCTCT 912
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 854 GAGCTGATGATGGATGATGTTTTCAGAATTGAGGATATGCCTTCTTTCTCTCTTCTCTCT 913
Query 913 TAG 915
|||
Sbjct 914 TAG 916
> AT3G43400.1 | Symbols: | ELMO/CED-12 family protein | chr3:15332136-15333703
FORWARD LENGTH=642
Length=642
Score = 590 bits (319), Expect = 1e-167
Identities = 405/444 (91%), Gaps = 15/444 (3%)
Strand=Plus/Plus
Query 407 CTACGTATCCTGGTGAAAAGCTTCAAGATTTGATCTCAGACCAGTGGAAAAATATGGGAT 466
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CTACGTATGCTGATGAAAAGCTTCAAGATTTGATCTCAGACCAGTGGAAAAATATGGGAT 271
Query 467 GGCAAGGAAAAGATCCATCCACTGATTTCAGAGGAGCTGGATTCATATCACTGGAGAATC 526
||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 272 GGCAAAGAAAAGATCCATCCACTGATTTCAGAGGAGATGGATTCATTTCATTGGAGAATC 331
Query 527 TTCTATTTTTTGCCAAGACATTCTCGACTTCGTTTCAGCGTCTGTTAAAGAAACAAGGAG 586
||| ||| |||| | | | | ||||| | || |||||| || |||||||| ||||
Sbjct 332 TTCGATTCTTTG-C-A-A-A-----GACTT--TCTC-GCGTCTCTTGAAGAAACAGGGAG 379
Query 587 GCAAAAGAGCGGCTTGGGAATATCCATTCGCGGTAGCAGGCGTCAACATAACCTTCATGA 646
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 380 GCAAAAGAGCAGCTTGGGAATATCCATTCGCTGTAGCGGGCGTCAACATAACCTTCATGA 439
Query 647 TCATGCAAATGCTCGACCTAGAAGCATCAAAGCCTAGGAGTTTTATACGGTTGGTGTTCT 706
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 440 TCATGCAAATGCTTGACCTAGAAGCATCAAAACCTAGGAGTTTTATACGGTTGGTATTCT 499
Query 707 TACAAATGCTGTCAGAAAATGAATGGGCCTTTGATTTGCTTTACTGTGTGGCCTTTGTGG 766
|||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 500 TACAAATGTTGTCAGAAAGCGAATGGGCCTTTGGTTTGCTTTACTGTGTTGCCTTTGTGG 559
Query 767 TAATGGACAAGCAATGGCTGGACAAGAACGCCACCTACATGGAATTCAACGATGTGCTAA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TAATGGACAAGCAATGGCTGGACAAGAACGCCACCTACATGGAATTCAACGATGTGCTAA 619
Query 827 GATCT--ACAAGGGGTCAGCTTGA 848
||| | |||||||| ||||||||
Sbjct 620 GATATGTACAAGGGG-CAGCTTGA 642
Score = 115 bits (62), Expect = 7e-25
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 177 ACTGATTAATGCGGATGCAGAGGATGCGAGCTGTAGTAGCACGCCTAGTTGGAGAATCAA 236
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 138 ACTAATTAACGCGGATGCAGAGGATGCGAGTTGTAGTAGCACGCCTAGTTGGAGAATCAA 197
Query 237 GAAAAGCCTAACAT 250
|||||| |||||||
Sbjct 198 GAAAAGTCTAACAT 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5