BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908296
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5)... 1247 0.0
AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MC... 470 2e-131
> AT1G67460.1 | Symbols: | Minichromosome maintenance (MCM2/3/5)
family protein | chr1:25269626-25271861 REVERSE LENGTH=1620
Length=1620
Score = 1247 bits (675), Expect = 0.0
Identities = 797/855 (93%), Gaps = 11/855 (1%)
Strand=Plus/Plus
Query 8 ACATTTTCTTCCGCCGCCGCTCTCACCTCCATCCTCCGTCGTATATCTATCTACCACGGC 67
||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||
Sbjct 251 ACATTTTCTTCCGCCGCCGCTCTCACCTCCATCCTCCGTCGTACAACGATCTATCACGGC 310
Query 68 GG-TGTTGGAATC-GG-ATCGGAATCCGCCGCAGCTTTTATTTTCTCTCAGCGAGACGAC 124
|| | |||||| | || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 311 GGAT-TTGGAA-CTGGTCTCCGAATCCGCCGCAGCTTTTATTTTCTCTCAGCGATACGAC 368
Query 125 AAGAGAACCCTAATGTCTCTAGAAATCCCCAGCACCCGAGCCAGAAGACTATTCTCAGAT 184
||||||||||||||||| ||| |||| ||| ||||||| | ||||||||||||||||
Sbjct 369 AAGAGAACCCTAATGTCACTAAAAAT-CCC--CACCCGA---ACAAGACTATTCTCAGAT 422
Query 185 CCTTCTTAGCTCCGGTTCTCTCGTTAGACGACAAACCTAAACTCAATAATCTTCAAGCCA 244
|||||||||||||||||||| |||||||||| |||||||| ||| | | ||||||||||
Sbjct 423 CCTTCTTAGCTCCGGTTCTCCCGTTAGACGAAAAACCTAACCTCGTTGAGCTTCAAGCCA 482
Query 245 TCGGTACAATCGCCACCGCTCAAGCGGACTATATGCGCGTCATTGTTCAAGATGTACCTG 304
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 483 TCGGTACAATCGCCACCGCTCTAGCTGACTACATGCGCGTCATTGTTCAAGATGTACCTG 542
Query 305 AGAGTGATTATGGAGATGATGATAAGATTGGCGTTGAGTTGCTTTGTGTGGTGAGAAAGT 364
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGAGTGATAATGGAGAGGATGATAAGATTGGCGTTGAGTTGCTTTGTGTGGTGAGAAAGT 602
Query 365 TGTTGAACAAGATTGGTAGGACTGTTCTTGTTGGTGATAAAGTTCTTGTGGATAAAGTTG 424
| |||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 603 TACTGAAGAAGATAGGTAGGACTGTTCTTGTTGGTGATAAAGTTCTCGTTGATAAAGTTG 662
Query 425 ATTGGATTGATCGGAGAGCTAAGATCATCAATGTGTTTGATCGAGTCTCGGAGATTTTGG 484
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 663 ATTGGGTTGATCGGAGAGCTAAGATTATCAATGTGTTTGATCGAGTCTCGGAGGTTTTGG 722
Query 485 AGCCACCGGTTGCGAATGTTGATCACTTACTGATTCTCTTCTCTCTTGATCAACCTAAGA 544
| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 723 ATCCACCGGTTGCGAATGTTGATCACTTAGTGATTCTGTTTTCTCTTGATCAACCTAAGA 782
Query 545 TTGATCCATTTACACTTACTAGGTTCTTGGTGGAAGCTGAATCTATTGGAATTCGAGTCA 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 783 TTGATCCATTTACACTTACTAGGTTCTTGGTGGAAGCTGAATCTATTGGAATTCGAATCA 842
Query 605 CAATTGCTTTGAACAAATGTGAACTCGTCACTCAAGAGGAAGTGGAATCTTGGAAGGTAA 664
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 843 CAGTTGCTTTGAACAAATGTGAACTCGTCACTCAAGAGGAAGTGGAATCTTGGAAGATAA 902
Query 665 GATTGCGTAGTTGGAACTATGAACCATTGTTTTGCAGTGTGGGAACAAAAGTCGGACTTG 724
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||
Sbjct 903 GATTGCGTAGTTGGAACTATGAACCATTGTTCTGTAGTGTGGGAACTAAAGTCGGAATTG 962
Query 725 ATGAGATTGCGTTTAACCTGCGAAATCAGACTTCTGTGGTTGTTGGACCTAGTGGTGTTG 784
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 963 ATGAGATTGCGTTTAACCTGCGAAATCAGACTTCTGTCATTGTTGGACCTAGTGGTGTTG 1022
Query 785 GAAAGTCGAGCTTAATCAATATATTGAGAAGTAGCTATGGTGGTGCCATTAAACACGAAG 844
||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1023 GAAAGTCCAGCTTAATCAATATATTGAGAAGTAGCTACGGTGGTGACATTAAACACGAAG 1082
Query 845 AAGTGTTTAAGCCTG 859
|||||||||||||||
Sbjct 1083 AAGTGTTTAAGCCTG 1097
Score = 736 bits (398), Expect = 0.0
Identities = 452/479 (94%), Gaps = 0/479 (0%)
Strand=Plus/Plus
Query 893 GCCAAAACAAGAAGAATAAAAAGAAGTGGTTTGAAGATCAGAGTGTAGGCCAAGTTTCAC 952
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1097 GCCAAAACAAGAAGAATAAAAAAAAGTGGTTTGAAGATCAGAGTGTAGGGGAAGTTTCAC 1156
Query 953 ATAGAAATGGATTAGGTAAACATACAACCCGAAATGTAACGCTACTTCCGCTTTGTGGAG 1012
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1157 ATAGAAATGGAAGAGGTAAACATACAACCCGAAATGTAACGCTACTTCCTCTTTGTGGAG 1216
Query 1013 GTGGATATCTTGCTGATACTCCTGGCTTTAACAAGCATAAGTTGCTGAAAGTAACAAAGC 1072
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 GTGGATACCTTGCTGATACTCCTGGCTTTAACAAGCATAAGTTGCTGAAAGTAACAAAGC 1276
Query 1073 AAAAACTTCCCCTGTGTTTTCCTGAGATACGGAAAATGGTTGAGGGAGGAAAATGTGAAT 1132
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1277 AAAAACTTCCCTTGTGTTTTCCTGAGATACGGAAAATGGTCGAGGGAGGAAAATGTAAAT 1336
Query 1133 TCAAAAATTGCTCGCATTTAGGGGTATATGGATGTGCTGTGACAGGTGATTGGGAAAGGT 1192
||| |||||||||||||||||||| | || |||||||||||||||| |||||||||||
Sbjct 1337 ACAAGGATTGCTCGCATTTAGGGGTACAAGGCTGTGCTGTGACAGGTGGTTGGGAAAGGT 1396
Query 1193 ATCATTACTACTTGCAACTGCTTGAAGAGATCAGGATCGATGAGGAGTCTCAACTTAAGA 1252
|| |||||| || ||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 1397 ATGATTACTTTTTACAACTGCTTGATGAGATCAAAATCGATGAGGAGTGTCAACTTAAGA 1456
Query 1253 AGTATGGAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAAC 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AGTATGGAACCAAAAGGGAAGGTGGTGTTAGTTGCCACATGGGAGAGAAGGGTGTGGAAC 1516
Query 1313 AAGCGAAACCACGGATAGATCCCAAGAAGTATAGGAGAGAGTCGAGGAAGACGATGAAA 1371
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1517 AAGCTAAACCACGGATAGATCCCAAGAAGTATAGGAGAGAATCGAGGAAGACGATGAAA 1575
> AT1G67440.1 | Symbols: emb1688 | Minichromosome maintenance (MCM2/3/5)
family protein | chr1:25263804-25265719 REVERSE LENGTH=1571
Length=1571
Score = 470 bits (254), Expect = 2e-131
Identities = 503/618 (81%), Gaps = 38/618 (6%)
Strand=Plus/Plus
Query 237 TCAAGCCATCGGTACAATCGCCACCGCTCAAGCGGACTATATGCGCGTCATTGTTCAAGA 296
|||||| || ||||| |||| || ||||||||| ||| |||||||||||||||||||||
Sbjct 258 TCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGA 317
Query 297 TGTA-C-----C--TGA-GAGTGATTATGGA-GATGA-TGAT--AAGATTGGCGTTGAGT 343
|||| | | ||| ||||||| || || |||| | | |||| ||| ||||| |
Sbjct 318 TGTAGCTAATTCTGTGACGAGTGATGAT-GATAATGATTCTTCAAAGACTGGTGTTGAAT 376
Query 344 TGCTTTGTGTGGTGAGAAAG-T-TGTTGAACAAGATTGGTAGGACTGTTCTT-GTTGGTG 400
|||||||||||||||| || | ||||||| || || | |||| ||| || ||||| |
Sbjct 377 TGCTTTGTGTGGTGAG--AGCTGTGTTGAAGAAAATACGAAGGAGAGTT-TTAGTTGGAG 433
Query 401 ATAAAGTTCTTG-TGGATAAAGTTGATTGGATTGATCGGAGAGCTAA-GA-TCATCAATG 457
|||| ||||||| ||||| | |||||||| ||||| | |||| || || | | ||||
Sbjct 434 ATAAGGTTCTTGTTGGATCTA-TTGATTGGGTTGATAGAAGAG-GAATGATTGA-GAATG 490
Query 458 TGTTTGATCGA-GTCTCGGAGATTTTGGAGCCACCGGTTGCGAATGTTGATCACTTAC-T 515
||||| ||||| || |||||||||||||| ||||| |||||||| |||||||| || | |
Sbjct 491 TGTTTCATCGACGT-TCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTT 549
Query 516 GATTCTCTTCTCTCTT-GATCAACCTAAGA-TTGATCCATTTACACTTACTAGGTTCTTG 573
| |||| |||||| || |||||||| || | |||| || ||||| |||||||||||||||
Sbjct 550 G-TTCTTTTCTCT-TTGGATCAACCGAA-ACTTGAGCCGTTTACTCTTACTAGGTTCTTG 606
Query 574 GTGGAAGCTGAATCTATTGGAATTCGAGTCACAATTGCTTTGAACAAATGTGAACTCGTC 633
|||||||||||||||| | | |||| | | ||| |||||||||| ||| ||||||| |
Sbjct 607 GTGGAAGCTGAATCTACTCGTATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATT 666
Query 634 ACTCAAGAGGAAGTGGAATCTTGGAAGGTAAGATTGCGTAGTTGGAACTATGAACCATTG 693
| | |||||||| ||||| |||||||| |||| |||||| | ||||||||||||||||||
Sbjct 667 AGTGAAGAGGAATTGGAAACTTGGAAGATAAGGTTGCGTGGATGGAACTATGAACCATTG 726
Query 694 TTTTGCAGTGTGGGAACAAAAG-TCGGACTTGATGAGATTGCGTTTAACCTGCGAAATCA 752
||||| ||||||||||| |||| | ||||||||||| ||||||||| ||| || ||||
Sbjct 727 TTTTGTAGTGTGGGAACTAAAGAT-GGACTTGATGATATTGCGTTTGTTCTGAGAGATCA 785
Query 753 GACTTCTGTGGTTGTTGGACCTAGTGGTGTTGGAAAGTCGAGCTTAATCAATATATTGAG 812
|||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 786 GACTTCTGTGATTGTTGGACCTAGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAG 845
Query 813 AAGTAG-CTATGGTGGTG 829
|||| | |||||||||
Sbjct 846 GAGTAATC-ATGGTGGTG 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5