BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908302
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67510.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3188 0.0
> AT1G67510.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:25297477-25300184 REVERSE LENGTH=2160
Length=2160
Score = 3188 bits (1726), Expect = 0.0
Identities = 2023/2167 (93%), Gaps = 17/2167 (1%)
Strand=Plus/Plus
Query 1 ATGAtccttctctcacttcttctccatcttcttcttcatctcctcaacacttctccttca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCCTTCTCTCACTTCTTCTCCATCTTCTTCTTCATCTCCTCAACACTTCTCCTTCT 60
Query 61 ctttctctctctccCGACGGTCTCGCTTTACTCTCACTCAAATCCGCCGTCGATCAATCT 120
|||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTTTCTCTTTCCCCCGACGGTATCGCTTTACTCTCACTCAAATCCGCCGTCGATCACTCC 120
Query 121 TCCTCCTCCGCTTTCTCCGATTGGAACGATAACGATTCCGATCCTTGTCGTTGGTCTGGA 180
||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 121 TCCTCCTCCGCTTTCTCCGATTGGAACGATAACGACACCGATCCTTGTCATTGGTCCGGA 180
Query 181 ATCTCTTGTATGAACATCTCAGACTCTTCTAACTCTCGCGTCGTTGGAATTTCCCTCGCC 240
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATCTCCTGTATGAACATCTCAGACTCTTCTACCTCTCGCGTCGTTGGAATTTCCCTCGCC 240
Query 241 GGAAAACATCTCCGTGGATACATCCCCTCGGAGCTTGGCTCGCTTGTTTACCTCCGCCGT 300
||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 241 GGAAAACATCTCCGTGGCTACATCCCCTCAGAGCTTGGCTCACTTATTTACCTCCGTCGT 300
Query 301 CTTAACCTCCATAACAACGAGCTTTTTGGTTCGATTCCGACTCAGTTATTCAACGCGACG 360
||||||||||| |||||||| |||| ||||| ||||| ||||| |||||||||||||||
Sbjct 301 CTTAACCTCCACAACAACGAACTTTACGGTTCAATTCCTACTCAATTATTCAACGCGACG 360
Query 361 TCGCTTCATAGTCTCTTCTTATACGGAAACAATCTCTCTGGTTCTCTCCCTCCTTCGATC 420
|||||||||||| ||||||||||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 361 TCGCTTCATAGTATCTTCTTATACGGTAACAATCTCTCCGGTACTCTTCCTCCTTCGATC 420
Query 421 TGTCACCTCCCAAAGCTTCAGAATCTCGATTTGTCCGGGAATTCGCTCTCTGGAACTCTT 480
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TGTAAACTCCCAAAGCTTCAGAATCTCGATTTGTCTATGAATTCGCTCTCTGGAACTCTT 480
Query 481 TCACCGGATCTCAACAAGTGTAAACAGCTTCAACGGTTGATCCTCGCCGCTAACAACTTC 540
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TCACCGGATCTCAACAAGTGTAAACAGCTTCAACGGTTGATCCTCTCCGCTAACAACTTT 540
Query 541 TCCGGTGAAATTCCTGGTGAAATCTGGCCGGAATTGAAGAATTTAGCTCAGCTTGATCTC 600
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 541 TCCGGTGAGATTCCTGGTGATATCTGGCCGGAATTGACTAATTTAGCTCAGCTTGATCTC 600
Query 601 TCTGCTAACGAATTCACCGGCGAAATCCCTAAAGATCTCGGAGAACTTAAATCTCTCTCT 660
|||||||||||||| |||||||||||||||| ||| ||||||| ||||| |||||||||
Sbjct 601 TCTGCTAACGAATTTTCCGGCGAAATCCCTAAGGATATCGGAGAGCTTAAGTCTCTCTCT 660
Query 661 GGTACTTTAAATCTCTC-TTTCAACCATTTATCCGGCGAAATCCCTAAATCACT-AGGGA 718
|||||||| |||||||| ||| ||||||||||||||| |||||||||| || || ||| |
Sbjct 661 GGTACTTTGAATCTCTCCTTT-AACCATTTATCCGGCCAAATCCCTAATTC-CTTAGGAA 718
Query 719 ATCTACCTGTTACAGTCTCTCTTGATCTCCGGAACAACGATTTCTCCGGCGAGATTCCTC 778
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCTACCGGTGACAGTCTCTCTTGATCTCCGGAACAACGATTTCTCCGGCGAGATTCCTC 778
Query 779 AATCTGGTTCATTCTCTAACCAAGGACCAACCGCATTCCTCAATAATCCGAAATTGTGTG 838
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||| ||||||
Sbjct 779 AATCTGGTTCGTTCTCTAACCAGGGGCCAACCGCATTTCTCAATAATCCGAAACTGTGTG 838
Query 839 GATTCCCTCTCCAGAAAGCTTGTAAAGACACTGATGAGAACTCACCGGGGACTCGAAAGT 898
| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 GTTTCCCTCTCCAGAAAACTTGTAAAGACACTGATGAGAACTCTCCGGGGACTCGAAAGT 898
Query 899 CGCCGGAGAATAATGGGGATTCTAGAAGAGGATTAAGTACTGGATTAATCGTGTTGATCT 958
|||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 899 CGCCCGAGAATAATGCGGATTCTAGAAGAGGGTTAAGTACTGGATTAATAGTGTTGATCT 958
Query 959 CGGTGGCGGATGCAGCAAGTGTAGCTTTAATTGGTCTGGTGTTAGTTTACTTGTACTGGA 1018
||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 959 CGGTGGCAGATGCAGCAAGTGTAGCTTTTATTGGTTTAGTGTTAGTTTACTTGTACTGGA 1018
Query 1019 AGAAAAAAGACTCTGAGGGAGGATGTAGCTGTACAGGGAATGAGAAACTCGGTGGT--T- 1075
|||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
Sbjct 1019 AGAAAAAAGACTCTGAGGGAGGGTGTAGCTGCACAGGGAATGCGAAACTCGGTGGTGGTT 1078
Query 1076 CGGAGAAGGGGAAATTGTGTTGTTGCATCGCGGGGTTTCCGAAAGGAG-ACGATTCGGAA 1134
||| ||||||||||| ||||||||| ||| ||||||||||||||| || | |||||||||
Sbjct 1079 CGGTGAAGGGGAAATCGTGTTGTTGTATCACGGGGTTTCCGAAAG-AGGATGATTCGGAA 1137
Query 1135 GCGGAAGAG-AACGGGAGAGGAGA-GGGTAAAGGAGATGGAGAGCTTGTAGCGATTGATA 1192
||||||| | || | ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1138 GCGGAAG-GTAATGAGAGAGGAGAAGGG-AAAGGAGATGGAGAGCTTGTAGCGATTGATA 1195
Query 1193 AAGGGTTTTCGTTTGAGCTTGATGAGTTGCTT-AGAGCTTCTGCTTATGTGTTGGGGAAG 1251
|||||||||| |||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 1196 AAGGGTTTTCTTTTGAGCTTGATGAGTTG-TTGAGAGCTTCTGCATATGTTTTGGGGAAG 1254
Query 1252 AGTGGGTTAGGGATAGTGTATAAAGTGGTGTTAGGGAACGGTGTTCCGGTGGCTGTAAGG 1311
|||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 1255 AGTGGGTTAGGGATAGTGTATAAAGTGGTGTTAGGGAATGGAGTTCCGGTGGCGGTGCGG 1314
Query 1312 CGACTTGGGGAAGGAGGAGAACAGAGGTATAAAGAGTTTGTTACGGAGGTTCAAGCTATG 1371
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CGACTTGGGGAAGGAGGGGAACAGAGGTATAAAGAGTTTGTTACGGAGGTTCAAGCTATG 1374
Query 1372 GGGAAAGTGAAGCATCCTAATGTGGTGAAGCTAAGAGCTTATTACTGGGCTCCTGATGAG 1431
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1375 GGGAAAGTGAAACATCCTAATGTGGTGAAGTTAAGAGCTTATTATTGGGCTCCTGATGAG 1434
Query 1432 AAGCTTTTGATCAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGGGAGG 1491
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AAGCTTTTGATTAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGGGAGG 1494
Query 1492 AATGGTCAACCATCACTGAGCTTAACATGGTCAACGCGGGTAAAGATCGCAAAAGGAGCT 1551
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1495 AATGGTCAACCATCACCGAGCTTAACATGGTCAACGCGTATAAAGATCGCAAAAGGAGCT 1554
Query 1552 GCACGTGGGCTAGCTTATCTACACGAGTGTAGTCCAAGGAAATTGGTACATGGCGACGTC 1611
|| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1555 GCGCGTGGGTTAGCTTATCTACACGAGTGTAGTCCAAGGAAGTTGGTACATGGCGACGTT 1614
Query 1612 AAGCCTTCCAACATTCTTCTTGATTCTTCCTTTACTCCTTACATCTCCGACTTCGGTCTC 1671
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1615 AAGCCTTCCAACATTCTTCTTGATTCCTCCTTCACTCCTTACATCTCTGACTTCGGTCTC 1674
Query 1672 ACACGTCTCATTACCATCACTGCCCCTTCCGCCTCCTCTAATGAACCTTCTTCCTCCTCT 1731
||||||||||| |||||||||||| |||| ||||| ||||| |||||||| |||||||||
Sbjct 1675 ACACGTCTCATCACCATCACTGCCGCTTCTGCCTCTTCTAACGAACCTTCCTCCTCCTCT 1734
Query 1732 GCCGCGGGCGGTTTCTTAGGTGGAGCTCTACCTTACACTTCCATCAAACCCTCTGATAGA 1791
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1735 GCTGCGGGTGGTTTCTTAGGTGGAGCTCTTCCTTACACTTCCATCAAACCCTCAGATAGA 1794
Query 1792 TCTAACGGCTATAAAGCACCTGAGGCCCGTCTCCCTGGAGGGAGGCCCACTCAGAAATGG 1851
|| |||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1795 TCCAACGGCTATAAAGCCCCCGAGGCCCGGCTCCCTGGAGGGAGGCCTACTCAGAAATGG 1854
Query 1852 GACGTCTACTCCTTCGGTGTTGTGCTTATGGAGCTTCTCACTGGGAAGTCTCCGGAATCT 1911
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 1855 GACGTATACTCCTTCGGTGTTGTGCTTATGGAGCTTCTCACCGGGAAATCGCCGGATTCT 1914
Query 1912 TCTCCGTTAAGCTCCTCCTCGTCGTCTACGGTGGTTGTTGAGGTGCCGGATTTGGTGAAG 1971
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TCTCCGTTAAGCTCTTCCTCGACGTCTACGGTGGTTGTTGAGGTGCCGGATTTGGTGAAG 1974
Query 1972 TGGGTGAGGAAAGGATTTGAAGAGGAGACTCCATTGTCGGACATGGTTGATCCAATGTTG 2031
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TGGGTGAGGAAAGGGTTTGAAGAGGAGACTCCATTGTCGGACATGGTTGATCCAATGTTA 2034
Query 2032 CTTCAAGAAGTTCACGCCAAGCAACAAGTCTTGTCCGTTTTTCA-CTTAGCTCTCGCTTG 2090
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2035 CTTCAAGAAGTTCACGCCAAGCAACAAGTCTTGTCCGTTTTTCATCT-AGCTCTCGCTTG 2093
Query 2091 TACTGAAGGTGACCCTGAAGTTCGTCCACGTATGAAGAACGTCTCTGAGAACATCGACAA 2150
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TACCGAAGGTGACCCTGAAGTCCGTCCACGTATGAAGAACGTCTCTGAGAACATCGACAA 2153
Query 2151 AATCTGA 2157
|||||||
Sbjct 2154 AATCTGA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106977361395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5