BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908315
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67570.1 | Symbols: | Protein of unknown function (DUF3537)... 2012 0.0
> AT1G67570.1 | Symbols: | Protein of unknown function (DUF3537)
| chr1:25325160-25327258 FORWARD LENGTH=1849
Length=1849
Score = 2012 bits (1089), Expect = 0.0
Identities = 1280/1372 (93%), Gaps = 14/1372 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGTCATCAACAACAATCACCGGCCGTTGAAACGCCGTTGTTGATCAATTCAAAT 60
||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 159 ATGGAGAGTCAGCAACAACAATCACCGGCCGTTGAAACGCCTTTGTTGCTCAATTCTAAT 218
Query 61 CAGGATCATCGAGAACGACCTTCGCCGGAAATCGA------------CGGCGGAGGAGGA 108
|||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 219 CAGGATCATCAAGACCGACCTTCGCCGGAAATCGACGGCGGCGGTGGCGGCGGAGGAGGA 278
Query 109 GAAGGTGTTAACGACGATCTAGACCGAACGCTGGAATGGTTAGAGACGTTTCTGACGCTT 168
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 279 GAAGGTGTTAACGACGATCTAGACCGAACGCTAGAATGGTTAGAGACGTTTTTGACGCTC 338
Query 169 CTTGGGTTTAATCAATCGTCTACACGAAGCCTTGTTTTGTCTTGGATCGTGTTTTTAGCG 228
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||
Sbjct 339 CTTGGGTTTAATCAATCGTCTAAACAAAGCCTTGTTCTGTCTTGGATCGTGTTTTTATCG 398
Query 229 ATTGGTTTGGTGCTTCCGGTTACAGTGTTGGAGTTAGGGCATTGTTTAGGGTGTGAGAGA 288
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 399 ATTGGTTTGGTGCTTCCGGTGACAGTGTTGGAGCTAGGTCATTGTTTAGGGTGTGAGAGA 458
Query 289 TATCAATACAAGAGTTTTGAGCTCAATATCGTTGTTTCGCAAGCATTGTTAGCTGGTGTT 348
||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 459 TATCAGTACAAGAGTTTCGAGCTCAACATCGTTGTTTCGCAGGCGTTGTTAGCTGGTGTT 518
Query 349 TCTCTGCTTTGCGTTTCTCATAATTTGAGAAAACATGGAATTAGAAAGTTTTTGTTCGTT 408
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 519 TCTCTGCTTTGCGTTTCTCATAATTTGAGAAAACATGGGATTCGAAAGTTTTTGTTTGTT 578
Query 409 GATCAACTTAGTGGTCGAATGGGTCGGCTCAAAGCTCAATATATT-AAGCAAATCTCGAA 467
|||||||||||||||||||||| ||| |||||||||||||| ||| || ||||||| |||
Sbjct 579 GATCAACTTAGTGGTCGAATGGATCGTCTCAAAGCTCAATACATTCAA-CAAATCTTGAA 637
Query 468 CTCTGTGAGGTTGCTTGCAGTTTGGTCGCTGCCATGTTTTGCGTTGAAAGCTATTCGTGA 527
|||||| || ||||||||||||||||| || ||||||||||| ||||| | | |||||||
Sbjct 638 CTCTGTAAGATTGCTTGCAGTTTGGTCACTTCCATGTTTTGCTTTGAAGGGTGTTCGTGA 697
Query 528 GATCATCCGAATGTATTATGTGCCTCATGACCAGGCGTGGCTATCTGTTGCAATTCTCTT 587
||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 698 GATCATCAGAATGTATTATGTGCCTCATGACCAGCCATGGTTATCTGTTGCAATTCTCTT 757
Query 588 GTCTATGATCTTGTCATGGACTTACTTAAGCACTATATTTCTAGCTGCAAGTGCCATGTT 647
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 758 GTCTATGATCTTGTCGTGGACTTACTTAAGCACTATCTTTCTAGCTGCAAGTGCTATGTT 817
Query 648 TCATTTAGTTTGTAACTTGCAAGTGATTCACTTTGAAGATTATGCAAAGCTCTTAGAAGG 707
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 818 TCATTTAGTATGTAACTTGCAAGTTATTCACTTTGAAGATTATGCAAAGCTTTTAGAAGG 877
Query 708 GGAGTCTGAAATCTCCCTTTTCATCTACGAGCATATGCGTTTGCGTCATTATCTTTCCAA 767
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 878 GGAGTCTGAAATCTCTCTTTTCATCTATGAGCATATGCGTTTGCGTCATTATCTTTCGAA 937
Query 768 AATAAGCCATAGGTTCCGCATCTTTCTGCTTTTACAGTTTCTGGTTGTCACAGCTAGCCA 827
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 938 AATAAGCCATAGGTTCCGCATCTTTCTGCTTCTACAGTTTCTGGTTGTCACAGCTAGCCA 997
Query 828 GTTTACTACGCTTTTCCAGACCACTGCGTATAGCGGGCGTATCACTTATGTAAATGGTGG 887
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 998 GTTTACTACGCTTTTTCAGACCACTGCGTATAGTGGGCGTATCACTTATATAAACGGTGG 1057
Query 888 TGATTTTGCGGTCTCGGCTGTGGTCCAAGTTGTTGGAATCATTCTGTGTCTGCATGCAGC 947
||||||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||
Sbjct 1058 TGATTTTGCAGTCTCTGCGGTTGTCCAAGTTGTTGGAATCATTTTGTGTCTACACGCAGC 1117
Query 948 AACAAAAATATCTCATAGAGCTCAAGCAATAGCATCAGTTGCAAGTAGATGGCATGCGAT 1007
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AACAAAAATATCACACAGAGCTCAAGCAATAGCATCAGTTGCAAGTAGATGGCATGCGAT 1177
Query 1008 GATGTCTTGCTCGTCTACAGATTCAACTCAGATAAGGACATCTCCTAGTGGAGTTCACTT 1067
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1178 GATGTCTTGCTCGTCTACAGATTCAACTCAGATAAGGGCATCTCCTAGTGGAGTTCATTT 1237
Query 1068 GGAGGCCACCACGAATCCACCCATCTCCTTTCCGATTTCCCGTTCAGATAGTGATGTAGA 1127
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1238 GGAGGCTACCACGAATCCGCCCATCTCCTTTCCGATTTCCCGTTCAGATAGTGATGTGGA 1297
Query 1128 ATCCTTGGATCACTACATGAGGATGCCTGCTACTAACCACTTTCCTTCTTACATGTCCAT 1187
||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1298 ATCAATGGATCACTACATGAGGATGCCTGTTACTAACCAGTTTCCTTCTTATATGTCCAT 1357
Query 1188 GTCCTCATATCACAAAAGACAAGCTTTCGTGTTGTATTTGCAGATGAATCCAGGCGGGAT 1247
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GTCCTCATATCACAAACGACAAGCTTTCGTGTTGTATTTGCAGATGAATCCAGGCGGGAT 1417
Query 1248 AACGATATTCGGGTGGACAGTAGACAGGCATTTGATAAACACAATATTCTTCATTGAACT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1418 AACGATATTCGGGTGGACAGTAGACAGGCATTTGATAAACACAATATTCTTCATTGAGCT 1477
Query 1308 CTCTCTAGTTACTTTTGTACTTGGCAAGACTGTGGTTTTCGGTTCTGAATGA 1359
||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1478 CTCTCTAGTTACTTTTGTACTCGGCAAGACTGTAGTTTTCGGTACTGAATGA 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5