BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908321
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67640.1 | Symbols: | Transmembrane amino acid transporter ... 2158 0.0
AT1G24400.1 | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine t... 1000 0.0
> AT1G67640.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:25352128-25353908 REVERSE LENGTH=1326
Length=1326
Score = 2158 bits (1168), Expect = 0.0
Identities = 1276/1329 (96%), Gaps = 3/1329 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGTCAGTTGTCTCCAACCAAGGACGACGCGTCCACAAAGCAGAAGAATGTA 60
|||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAAGTCAATCGTCTCCAACCAA-G--GACGCGTCCACAAAGCAGAAGAATGTA 57
Query 61 GATGACTGGTTGCCGATAACGTCCTCTAGAAATGCCAAATGGTGGTACTCTGCGTTTCAC 120
|| || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 58 GACGATTGGTTACCGATAACATCCTCTAGAAATGCCAAGTGGTGGTACTCTGCGTTTCAC 117
Query 121 AATGTCACCGCCATGGTCGGAGCTGGTGTGCTCAGCTTACCCTACGCCATGTCCAACCTT 180
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||
Sbjct 118 AATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGCCATGTCTAATCTT 177
Query 181 GGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTTTACACAATA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 178 GGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATAACATTCTACACACTA 237
Query 241 TGGCAGATGGTGCAAATGCATGAGATGGTTCCAGGGAAGAGGTTCGACAGGTACCATGAA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TGGCAGATGGTGCAAATGCACGAGATGGTTCCAGGGAAGAGGTTCGACAGGTACCACGAA 297
Query 301 TTAGGTCAACACGCGTTTGGGGAGAAGCTTGGACTCTGGATCGTGGTGCCACAACAACTA 360
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 298 TTAGGCCAACACGCGTTTGGGGAGAAGCTCGGACTATGGATCGTGGTGCCACAACAACTA 357
Query 361 ATCGTTGAAGTAGGTGTGGATATTGTATACATGGTTACGGGAGGGAAGTCATTGaaaaaa 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 ATCGTTGAAGTAGGTGTGGATATTGTGTACATGGTTACGGGAGGGAAGTCATTGAAAAAA 417
Query 421 aTCCATGACCTTCTTTGCACCGATTGCAAAAATATAAGAACTTCATATTGGATCATGATC 480
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 ATTCATGACCTTCTTTGCACCGATTGCAAAAATATAAGAACTACATATTGGATCATGATC 477
Query 481 TTCGCTTCCATACACTTTGTTCTTGCTCATCTCCCTAACTTTAACTCTATGTCTATCGTC 540
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 478 TTCGCTTCCATACACTTTGTTCTTGCTCATCTCCCTAATTTTAACTCCATATCTATCGTC 537
Query 541 TCCCTTGCTGCTGCCGTTATGTCTTTGAGCTATTCGACAATCGCTTGGGCAACCTCGGTG 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 TCCCTTGCTGCTGCCGTTATGTCTTTGAGCTACTCGACAATCGCTTGGGCAACCTCGGTG 597
Query 601 AAGAAAGGAGTTCATCCAAATGTAGACTACTCGTCTAGAGCATCTACGACCTCAGGAAAT 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 AAGAAAGGAGTTCATCCAAATGTAGACTACTCGTCTAGAGCATCTACAACCTCAGGAAAT 657
Query 661 GTATTCAACTTCTTGAATGCACTAGGAGATGTGGCATTTGCGTATGCAGGTCACAACGTC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTATTCAACTTCTTGAATGCACTAGGAGATGTGGCATTTGCGTATGCAGGTCACAACGTT 717
Query 721 GTGTTGGAGATTCAAGCTACTATTCCTTCAACTCCTGAGAAACCATCAAAGATTGCAATG 780
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GTGTTGGAGATACAAGCTACTATTCCTTCAACACCTGAGAAACCATCAAAGATTGCAATG 777
Query 781 TGGAAAGGAGTTGTAGTTGCCTATGTCGTGGTCGCCATATGCTACTTCCCCGTTGCATTC 840
||||||||||| |||||||| || |||| || |||||||||||||| |||||||||||
Sbjct 778 TGGAAAGGAGTAGTAGTTGCATACATCGTTGTTGCCATATGCTACTTTCCCGTTGCATTT 837
Query 841 GTTTGCTACTATATTTTTGGAAACAGTGTGGACGACAATATTCTCATGACGTTGCAGAAA 900
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 GTTTGCTACTATATCTTTGGAAACAGTGTGGACGACAATATTCTCATGACGTTGGAGAAA 897
Query 901 CCCATCTGGCTTATCGCCATTGCTAACGCATTCGTGGTTGTCCATGTCATTGGAAGCTAT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CCCATCTGGCTTATCGCCATTGCTAACGCATTCGTGGTTGTCCATGTCATTGGAAGCTAC 957
Query 961 CAAATATACGCAATGCCGGTCTTTGACATGCTTGAAACCTTTTTGGTAAAGAAGATGATG 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 CAAATATACGCAATGCCGGTCTTTGACATGCTCGAAACCTTTTTGGTAAAGAAGATGATG 1017
Query 1021 TTCGCTCCGTCCTTCAAACTCCGCTTCATCACTCGTACTCTATATGTTGCTTTCACGATG 1080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTCGCTCCTTCCTTCAAACTCCGCTTCATCACTCGTACTCTATATGTTGCTTTCACGATG 1077
Query 1081 TTTGTTGCTATATGCATCCCATTTTTTGGTGGATTACTCGGtttttttGGAGGATTCGCC 1140
|| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1078 TTCGTTGCCATATGCATCCCATTTTTTGGTGGATTGCTCGGGTTTTTCGGAGGATTCGCC 1137
Query 1141 TTTGCCCCAACAACTTACTATCTACCATGCATCATGTGGCTTTGTATCAAGAAACCAAAG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTGCCCCAACAACTTACTATCTACCATGCATCATGTGGCTTTGTATCAAGAAACCAAAG 1197
Query 1201 AAGTATGGATTGTCTTGGTGTATTAATTGGTTTTGCATAGTAGTTGGTGTTATATTGACG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGTATGGATTGTCTTGGTGTATTAATTGGTTTTGCATAGTAGTTGGTGTTATATTGACG 1257
Query 1261 ATCGTAGCTCCCATTGGTGGCCTCAGAACCATTATTATCTCAGCCAAAAACTACAAATTC 1320
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 ATCCTAGCTCCCATTGGTGGCCTCAGAACCATTATTATCTCAGCCAAAAACTACGAATTC 1317
Query 1321 TTCTCTTGA 1329
|||||||||
Sbjct 1318 TTCTCTTGA 1326
> AT1G24400.1 | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine
transporter 2 | chr1:8651407-8653828 REVERSE LENGTH=1749
Length=1749
Score = 1000 bits (541), Expect = 0.0
Identities = 1053/1300 (81%), Gaps = 36/1300 (3%)
Strand=Plus/Plus
Query 46 AAGCAGAAGAATGTAGATGACTGGTTGCCGATAACGTCCTCTAGAAATGCCAAATGGTGG 105
||||||||||| || || || ||||| ||||| || || || ||||| || || ||||||
Sbjct 310 AAGCAGAAGAACGTCGACGATTGGTTACCGATCACATCTTCCAGAAACGCTAAGTGGTGG 369
Query 106 TACTCTGCGTTTCACAATGTCACCGCCATGGTCGGAGCTGGTGTGCTCAGCTTACCCTAC 165
|||||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct 370 TACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAGCTTGCCCTAC 429
Query 166 GCCATGTCCAACCTTGGATGGGGACCTGGAGTGACAATAATGATAATGTCATGGCTGATA 225
|| |||||||| || |||||||||||||||||||| || ||| | ||||||||| | |||
Sbjct 430 GCTATGTCCAATCTCGGATGGGGACCTGGAGTGACGATTATGGTGATGTCATGGATCATA 489
Query 226 ACATTTTACACAATATGGCAGATGGTGCAAATGCATGAGATGGTTCCAGGGAAGAGG-TT 284
|| || |||||| | ||||| |||||| | ||||||||||| ||||||||||||||| ||
Sbjct 490 ACGTTGTACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTT 549
Query 285 CGACAGGTACCATGAATTAGGTCAACACGCGTTTGGGGAGAAGCTTGGACTCTGGATCGT 344
|| ||||| || || ||||||||||||| ||||| || |||||||| || ||||||||
Sbjct 550 -GATAGGTATCACGAGCTAGGTCAACACGCTTTTGGTGAAAAGCTTGGCCTATGGATCGT 608
Query 345 GGTGCCACAACAACTAATCGTTGAAGTAGGTGTGGATATTGTATACATGGTTACGGGAGG 404
||||| || || || ||||| || || ||||| || || || || ||||| || |||||
Sbjct 609 CGTGCCGCAGCAGCTTATCGTGGAGGTCGGTGTTGACATCGTTTATATGGTCACAGGAGG 668
Query 405 -GAAGTCATTGaaaaaaaTCCATGACCT--TCTTTGCACCGATTGCAAAAATATAAGAAC 461
| | || | || ||| ||||| | || ||| | | ||||||||||| | || |||||
Sbjct 669 AGCA-TCCCTCAAGAAAGTCCATCAACTAGTCTGT-C-CCGATTGCAAAGAGATCAGAAC 725
Query 462 TTCATATTGGATCATGATCTTCGCTTCCATACACTTTGTTCT-TGCTCATC-TCCCTAAC 519
| | | ||||||||||||||| |||||| | ||||||||| | | |||| | |||| ||
Sbjct 726 TACGTTTTGGATCATGATCTTTGCTTCCGTCCACTTTGTTATCT-CTCACCTTCCC-AA- 782
Query 520 TTT-AACTCTATGTCTATCGTCTCCCTTGCTGCTGCCGTTATGTCTTTGAGC-TATTCGA 577
||| |||||||| || ||| |||| ||||| || || |||||||| || | | || || |
Sbjct 783 TTTCAACTCTATCTCCATCATCTCACTTGCCGCGGCTGTTATGTCCTT-AACTTACTCAA 841
Query 578 CAATCGCTTGGGCAACCTCGGTGAAGAAAGGAGTTCATCCAAATGTAGACTACTCGT-CT 636
| || |||||||| | || ||| | ||||| || |||||| |||| |||||||| | ||
Sbjct 842 CTATTGCTTGGGCTGCATCCGTGCACAAAGGGGTACATCCAGATGTGGACTACTC-TCCT 900
Query 637 AGAGCATCTA-CGACCTCAGGAAATGTATTCAACTTCTTGAATGCACTAGGAGATGTGGC 695
|||||||| | ||| | ||||| |||||||||||||||||||| | |||||||||||
Sbjct 901 AGAGCATCAACCGATGT-TGGAAAAGTATTCAACTTCTTGAATGCGTTGGGAGATGTGGC 959
Query 696 ATTTGCGTATGCAGGTCACAACGTCGTGTTGGAGATTCAAGCTACTATTCCTTCAACTCC 755
||||| ||||||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct 960 TTTTGCTTATGCAGGTCACAACGTTGTGTTGGAGATTCAGGCCACAATCCCTTCGACTCC 1019
Query 756 TGAGAAACCATCAAAGATTGCAATGTGGAAAGGAGTTGTAGTTGCCTATGTCGTGGTCGC 815
|||| ||||| ||| | ||||||||| ||||||| | || ||||| | || |||||
Sbjct 1020 GGAGATGCCATCCAAGGTCCCAATGTGGAGAGGAGTTATTGTAGCCTACATTGTAGTCGC 1079
Query 816 CATATGCTACTTCCCCGTTGCATTCGTTTGCTACTATATTTTTGGAAACAGTGTGGACGA 875
||| || |||||||| || |||||| | |||| ||||| ||||||||||| || || ||
Sbjct 1080 CATCTGTTACTTCCCTGTAGCATTCCTCGGCTATTATATCTTTGGAAACAGCGTTGATGA 1139
Query 876 CAATATTCTCATGACGTTGCAGAAACCCATCTGGCTTATCGCCATTGCTAACGCATTCGT 935
||| || ||||| || ||| |||| || ||||||||||| || || |||||| |||||
Sbjct 1140 CAACATCCTCATCACTTTGGAGAAGCCTATCTGGCTTATTGCTATGGCTAACATGTTCGT 1199
Query 936 GGTTGTCCATGTCATTGGAAGCTATCAAATATACGCAATGCCGGTCTTTGACATGCTTGA 995
|||| |||||||||||||||||||||| |||| |||||||| || ||||||||||| ||
Sbjct 1200 GGTTATCCATGTCATTGGAAGCTATCAGATATTTGCAATGCCAGTTTTTGACATGCTCGA 1259
Query 996 AACCTTTTTGGT-AAAGAAGATG-ATGTTCGCTCCGTCCTTCAAACTCCGCTTCATCACT 1053
|||| ||||||| ||| |||||| || ||| ||| || ||||| ||||||||||| |||
Sbjct 1260 AACCGTTTTGGTCAAA-AAGATGAAT-TTCAATCCTTCTTTCAAGCTCCGCTTCATTACT 1317
Query 1054 CGTACTCTATATGTTGCTTTCACGATGTTTGTTGCTATATGCATCCCATTTTTTGGTGGA 1113
|||| ||| || || |||||||||||| ||||||| |||||| |||| ||||| ||||||
Sbjct 1318 CGTAGTCTTTACGTCGCTTTCACGATGATTGTTGCGATATGCGTCCCGTTTTTCGGTGGA 1377
Query 1114 TTACTCGGtttttttGGAGGATTCGCCTTTGCCCCAACAACTTACTATCTACCATGCATC 1173
||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1378 CTACTCGGCTTCTTTGGAGGATTCGCCTTTGCCCCAACAACTTACTACCTTCCATGCATT 1437
Query 1174 ATGTGGCTTTGTA-TCAAGAAACCAAAGAAGTATGGAT-TGTCTTGGTGTAT-TAATTGG 1230
|||||||| || ||||||||||||||| || ||| | | |||||| | ||| |||
Sbjct 1438 ATGTGGCTC-GTTCTCAAGAAACCAAAGAGGTTTGG-TCTATCTTGGAC-AGCTAACTGG 1494
Query 1231 TTTTGCAT-AGTAGTTGGTGTTATATTGACGATCGTAGCTCCCA-TTGGTGGCCTCAGAA 1288
|| ||||| | |||| || ||| | ||||||||| | || |||| |||| || |||||||
Sbjct 1495 TTCTGCATCA-TAGTAGGAGTTCTTTTGACGATCCTTGC-CCCAATTGGAGGACTCAGAA 1552
Query 1289 CCATTATTATCT-CAGCCAAAAACTACAAATTCTTCTCTT 1327
|||| |||||| | ||||| | |||||| ||||||||||
Sbjct 1553 CCATCATTATCAAC-GCCAAGACCTACAAGTTCTTCTCTT 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5