BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg908332

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28730.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   331    2e-90


> AT5G28730.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G43722.1); 
Has 496 Blast hits to 496 proteins in 68 species: Archae - 
0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:10779003-10780218 
FORWARD LENGTH=891
Length=891

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 217/235 (92%), Gaps = 4/235 (2%)
 Strand=Plus/Plus

Query  37   TCGACAAACATAAGCCTCGACGAGAGTGTTGCAATCTTTCTAATCATTTGTGCC-CAAAA  95
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  151  TCGACGAACATAAGCCTCGACGAGAGTGTTGCAATCTTTCTAATCATTTGTGCCTCAAA-  209

Query  96   TGATACACAAGGTGATATTGCACTAAGGTTTGGGCATGTCCAGGAGACAATTTGGCGAAA  155
            |||||||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||
Sbjct  210  TGATACACAACGTGATATTGCATTAAGGTTTGGACATGCCCAAGAGACAATTTGGCGAAA  269

Query  156  GTTTCATGATGTTCTTAAAGCAATGGAACGATTGGCAGTAGAATATATACTTCCCA-GAA  214
            |||||||||||| ||||||||||||||||||||||| ||||| |||||||  |||| |||
Sbjct  270  GTTTCATGATGTGCTTAAAGCAATGGAACGATTGGCTGTAGAGTATATACG-CCCAAGAA  328

Query  215  CAGTCGAAGAACTTAGAGCTATCTCCAACCGTTTGCAAGACGATACAAGATATTG  269
             |||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct  329  AAGTCGAAGAACTTAGAGCTATCTCTAATCGTTTGCAAGATGATACAAGATATTG  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5