BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg908362
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G68150.1 | Symbols: WRKY9, ATWRKY9 | WRKY DNA-binding protei... 1742 0.0
AT1G18860.1 | Symbols: WRKY61, ATWRKY61 | WRKY DNA-binding prot... 176 4e-43
> AT1G68150.1 | Symbols: WRKY9, ATWRKY9 | WRKY DNA-binding protein
9 | chr1:25543969-25545717 FORWARD LENGTH=1228
Length=1228
Score = 1742 bits (943), Expect = 0.0
Identities = 1038/1083 (96%), Gaps = 9/1083 (1%)
Strand=Plus/Plus
Query 6 AAA-AATAGAAGTTCGATTTGCATCTCCATTAATGGGCATCGATCTTTCTCTTAAGCTCG 64
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AAAGAATAGAGGTTCGATTTGCATCTCCATTAATGGGCATCGATCTTTCTCTTAAGCTCG 107
Query 65 AGGCCAAGGAGAAAAAGAAAGAGATAGAAGGATCAAAACATAGCCGTGAGAATAAAGAAG 124
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 108 AGGCCGAGGAGAAAAAGAAAGAGATAGAAGGATCGAAACATAGCCGTGAGAACAAAGAAG 167
Query 125 ACGAAGAACATGATGCTAGTGGTGATAAAGATGAACAAATGGTGAAAGAAGCCGAAGATG 184
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 168 ACGAAGAACATGATGCTAGTGGTGATGAAGATGAACAAATGGTGAAAGAAGACGAAGATG 227
Query 185 A---TTCTTGTTTAGGTTCAAGAACCCGAGAAGAAGAAAACGAACGTGAAGAGCTCTTGC 241
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATTCTTCTTCTTTAGGTTTAAGAACCCGAGAAGAAGAAAACGAACGTGAAGAGCTCTTGC 287
Query 242 AGCTACAGATCCAGATGGAAAGTGTGAAAGAAGAGAATACTAGGTTGAGGAAGCTTGTCG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGCTACAGATCCAGATGGAAAGTGTGAAAGAAGAGAATACTAGGTTGAGGAAGCTTGTCG 347
Query 302 AGCAGACTCTTGAAGATTATCGTCATCTGGAGATGAAATTCCCGGTTATCGATAAAACCA 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 348 AGCAGACTCTTGAAGATTATCGTCATCTTGAGATGAAATTCCCGGTTATCGATAAAACCA 407
Query 362 AGAAGATGGATCTTGAAATGTTCCTTGGAGTACAAGGCAAACGATGTGTGGATATAAAAA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 408 AGAAGATGGATCTTGAAATGTTCCTTGGAGTACAAGGCAAACGATGTGTGGATATAACAA 467
Query 422 GTAAGGTTCAGAAAAGAGGAGGTGAGAGATCTCCATCCATGGAAAGAGAAATAGGGCTTT 481
|||||| || ||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 468 GTAAGGCTCGGAAAAGAGGAGCTGAGAGATCTCCGTCAATGGAAAGAGAAATAGGGCTTT 527
Query 482 CACTTTCTCTACAGAAAAAGCAGAAACAAGAAGAGAGCAAAGAAGCTGTTCAGTCTCATC 541
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CACTTTCTCTAGAGAAAAAACAGAAACAAGAAGAGAGCAAAGAAGCTGTTCAGTCTCATC 587
Query 542 ATAACCAAAGATACAATATTAGCAGCTTCGATACAAACGCGCCACGTATCATTTCATCTT 601
| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||
Sbjct 588 A---CCAAAGATACAATAGTAGCAGCTTAGATATGAATATGCCACGTATCATTTCATCTT 644
Query 602 CTCAAGGGAATAGAAAGGCCAGGGTGTCTGTGAGGGCGAGATGTGAGACCGCAACAATGA 661
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 645 CTCAAGGTAATAGAAAGGCCAGGGTGTCCGTGAGGGCGAGATGTGAGACCGCAACAATGA 704
Query 662 ATGATGGATGCCAATGGAGGAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCAC 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 705 ATGATGGATGCCAATGGAGGAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCTC 764
Query 722 GAGCTTATTACCGATGCACCGTGGTTCTAGGATGTCCCGTTAGGAAACAGGTGCAAAGGT 781
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 765 GAGCTTATTACCGATGCACCGTGGCTCCAGGATGTCCCGTTAGAAAACAGGTGCAAAGGT 824
Query 782 GTTTAGAAGACATGTCAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GTTTAGAAGACATGTCAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTC 884
Query 842 CGGTCGGAGCAACAGCCTTGGCTTCCACTGCCTCTACTTCTCCATTCTTGTTACTCGATT 901
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CGGTCGGAGCAACAGCCATGGCTTCCACTGCCTCTACTTCTCCATTCTTGTTACTCGATT 944
Query 902 CCAGCGACAACCTCTCTCATCCTTCCTATTACCAAACTCCTCCAGTCATAGACTCTTCTT 961
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 945 CCAGTGACAACCTCTCTCATCCTTCCTATTACCAAACTCCTCAAGCCATAGACTCTTCTT 1004
Query 962 TGATTACATACCCACAAAATAGCAGC-ACCAATAATCGAACCATAAGAAGCTTGAACTTT 1020
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1005 TGATTACATACCCACAAAATAGCAGCTAC-AACAATCGAACCATAAGAAGCTTGAACTTT 1063
Query 1021 GATGGTCCATCTAGAGGAGATCATGTTTCATCTTCTCAAAACCGATTAAATTGGATGATG 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1064 GATGGTCCATCTAGAGGAGATCACGTTTCATCTTCTCAAAACCGATTAAATTGGATGATG 1123
Query 1081 TAG 1083
|||
Sbjct 1124 TAG 1126
> AT1G18860.1 | Symbols: WRKY61, ATWRKY61 | WRKY DNA-binding protein
61 | chr1:6509492-6511227 FORWARD LENGTH=1463
Length=1463
Score = 176 bits (95), Expect = 4e-43
Identities = 184/226 (81%), Gaps = 10/226 (4%)
Strand=Plus/Plus
Query 622 AGGGTGTCTGTGAGGGCGAGATGTGAGAC-CGCAACAATGAATGATGGATGCCAATGGAG 680
||||| || ||||| | ||||||||||| | |||| ||||| || ||||| ||||||||
Sbjct 534 AGGGTTTCGGTGAGATCAAGATGTGAGACAC-CAACGATGAACGACGGATGTCAATGGAG 592
Query 681 GAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCACGAGCTTATTACCGATGCAC 740
||| || || ||||||| || ||||| ||||||||||| |||||||| || || |||||
Sbjct 593 GAAATATGGCCAGAAAATAGCTAAAGGCAATCCATGTCCCCGAGCTTACTATCGTTGCAC 652
Query 741 C-GTG--G-TTCTAGGATGTCCCGTTAGGAAACAGGTGCAAAGGTGTTTAGAAGACATGT 796
| || | |||| ||||| || || |||||||||||||| |||| |||||| ||||
Sbjct 653 CATTGCAGCTTCT----TGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAAGATATGT 708
Query 797 CAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTCC 842
| ||||| || |||| |||||||||||||||||||||||||||||
Sbjct 709 CTATACTTATCTCAACGTACGAAGGAACACATAACCATCCACTTCC 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5